Octopus bimaculoides (California two-spot octopus): 106868731
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Entry
106868731 CDS
T04127
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106868731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obi03041
]
106868731
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106868731
Spliceosome [BR:
obi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106868731
Complex C
U5 SnRNP specific factors
106868731
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-GeneID:
106868731
NCBI-ProteinID:
XP_014769614
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All DBs
Position
9:89722416..89740778
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AA seq
781 aa
AA seq
DB search
MDDHDKRVEKHVNSSDKEDLGFDRKKDKTTAAVSKSPKLERSKSKDHERRHHSKEKSKHR
SRSRDRQDSRNRERRRNRSRSKERHRSRSRERPKAKRHKEQIHKSKDKIKEERKGKTAPA
KVPLSLEELLAKKKAEEEALSKRHARGDSGHKKSFGKLPAAFSRVFSEKDLDNGREKYDK
DNKRRERKDKEEEDRNKLLDMKDKEKEVEAIKERYLGIIKKRRRVRRLNDRKFVFDWDAG
DDTSQDYNPIYKDRHAVQFFGRGHVAGIDLKAQKKDQSKFYGDLLERRRTEAEKEQERKR
LKNVAKKEAKQKWDDRHWSEKDSQQMQERDWRIFKEDYNITCKGGRIPHPIRFWQESILA
KEILDIIDSVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWIQSLPKI
ERMEDADQGPYAIILAPTRELAQQIEEETIKFGTALGIRTVAVIGGISREEQGFKLRQGC
EVVIATPGRLIDVLENRYLVLNQCTYVVMDEADRMIDMGFEPEVQKILEFLPVSNQKPDT
EEAEDDTKMLQNFNSKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSAGKPTERVE
QITYMVSENEKRKKLLSILEAGTEPPIIIFVNQKKGADVLAKSLEKMNYNATTLHGGKGQ
EQREFALASLKGGAKDILVATDVAGRGIDIKDVSLVINYDMAKNIEDYTHRIGRTGRAGK
TGVAISFLTKDDSNVFYDLKQVIMSSPVSTCSPELANHPESQHKPGSMLHKKRKDETVYV
N
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcacgacaaaagggtagaaaagcatgtcaactcttctgacaaagaggatctg
ggtttcgatcgcaagaaagacaaaacgactgccgcggtttccaagtctccgaaactagag
cgatcgaagtcgaaagatcacgaaagacggcatcatagcaaagaaaaatccaaacatcga
tcacgaagtagagacaggcaggacagtcgcaatcgtgaaaggcgtcgaaacagaagtcgc
agcaaggaacgacatcgcagccgaagcagagaacggccgaaggcaaagcggcacaaagag
cagatccacaagagtaaagataaaatcaaagaagagaggaaaggcaaaactgcacctgca
aaagtgcctttatctttggaggagttattggcaaagaagaaagctgaagaggaagctttg
agcaaaaggcatgctcgaggtgattcaggtcacaaaaagtcatttgggaaactgcctgca
gcatttagccgtgtattttcagaaaaagatctcgataatggccgtgagaaatatgacaag
gacaacaaacggcgagaacgcaaggacaaagaagaagaagaccgcaataaactgctggac
atgaaggacaaagagaaagaagtggaggctattaaggagcgataccttggaattattaag
aaacggcgccgagttcgacgtctcaacgacagaaagtttgtgtttgactgggatgcagga
gatgacacgtcccaggattacaaccccatctacaaggacaggcatgcagtgcagttcttt
ggcaggggccatgtagccggaattgatctcaaggctcagaagaaggaccagtccaagttt
tatggggatctcctggaaaggaggcgtacagaagcggagaaggaacaagaaaggaaacgt
ttgaagaacgtagcaaagaaagaggccaaacagaagtgggatgaccgacattggtcagag
aaggactcgcagcagatgcaggaacgtgattggcgtatattcaaggaagattacaacatc
acttgtaaaggtggtcggatcccacatccaattcgattctggcaagaatcaatattggcc
aaagaaatcctggatatcattgacagtgttggctacaaagaaccgacccccattcaaaga
caagccatccctattggtctacaaaacagggacatcattggtgtggctgagacagggtct
ggcaaaacagcagctttccttatccctttacttgtttggattcagtctttgccaaaaatt
gaaagaatggaagatgccgaccagggaccatatgccattatcttagctccaaccagagaa
ttggcacaacagattgaagaagagactatcaagtttggaactgccttaggaattcgtaca
gttgctgtcattggaggtatatctcgagaggagcaaggtttcaagttacgacaaggctgt
gaagtagttattgccacacctggtcgtctgattgatgtcctggagaacaggtaccttgta
ttgaaccagtgtacgtatgtggtgatggacgaggccgacagaatgattgacatgggcttt
gagccagaagtgcagaagattctggagtttttacctgtcagtaaccagaaaccagacacc
gaggaggcggaagatgataccaagatgttacagaacttcaactccaagaagaaatatcgc
cagactgtcatgttcacagccaccatgccccctgctgtagaacgactggcaaggacctat
cttcggcggccagctgttgtgtacattggctctgctggcaaaccaacagagcgcgtggaa
caaatcacgtatatggtgtctgaaaatgagaaacgtaagaagcttctgagtatactggag
gctggcactgaacccccaataatcatcttcgttaaccaaaagaagggggcagacgttctg
gccaaatccctggagaaaatgaattacaatgctacaacacttcacggtggaaaaggtcaa
gaacagagagagtttgccctggccagtttgaaaggtggtgccaaagacattttggttgct
actgatgttgccgggcgtggtattgatatcaaagatgtatcgttggtcattaattatgac
atggcgaaaaatattgaagactatactcatcgtattggccgaacgggtcgagcgggcaag
accggtgttgcaatttcattcctgaccaaagatgacagtaatgtcttctatgatctgaag
caagtaatcatgagcagccccgtgtcaacgtgttctccagaactggccaaccaccctgaa
tcacaacacaagccaggcagcatgttacacaaaaagaggaaagacgagactgtctatgtc
aactga
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