Octopus bimaculoides (California two-spot octopus): 106869156
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Entry
106869156 CDS
T04127
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03008
Ribosome biogenesis in eukaryotes
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106869156
09123 Folding, sorting and degradation
03018 RNA degradation
106869156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obi03021
]
106869156
03019 Messenger RNA biogenesis [BR:
obi03019
]
106869156
03009 Ribosome biogenesis [BR:
obi03009
]
106869156
03016 Transfer RNA biogenesis [BR:
obi03016
]
106869156
Transcription machinery [BR:
obi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106869156
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
106869156
Ribosome biogenesis [BR:
obi03009
]
Eukaryotic type
Pre-60S particles
RNases
106869156
Transfer RNA biogenesis [BR:
obi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
106869156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Alg17C_C
Motif
Other DBs
NCBI-GeneID:
106869156
NCBI-ProteinID:
XP_014770252
LinkDB
All DBs
Position
1:complement(57673083..57676569)
Genome browser
AA seq
928 aa
AA seq
DB search
MGVPAFFRWLSRKYTSIVVHCVEEKPKEIEDTTVPVDASKPNPNDVEFDNLYLDMNGIIH
PCCHPENKPAPANEDEMMIDIFEYIDRIFNICRPRKLLYMAIDGVAPRAKMNQQRSRRFR
SSKEAVESEFEKSKLRDELLSKGYHLPPPKEKGERFDSNCITPGTPFMFRLAECLRYYVY
DRLNNAPGWENIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTHHCLCGADADLIML
GLATHEPHFTIIREEFKYNQPRPCELCGQLGHEMTECVGLPKEECDKPLEKALGSEQEFI
FIRLCVLREHLQLQLHMDGLPFKYDFERAVDDWVFMCFFVGNDFLPHLPSLEIREGAIDR
LVGIYKRCVYRTGGYLTEDGVVKLDRVQFVLSELGKVEDEIFKNRRQRDIEYRRREKQNK
RAKFGDKPKWMLGGQYAPSAVGSNRDPVQNPRQTAADMRKMTYGSKQNHSDNSSRNESER
SQSNKRKHEDDEEEDEPADDVKLWENGWKDRYYKSKFDVDKDDVAFRHQVANHYVRGLCW
VLRYYYQGCSSWKWYFPYHYAPFASDFLNVGDLSNEFEKNTEPFKPLEQLMGVFPAASRQ
FLPVTWQRLMVDEDSPVIDFYPTDFKVDLNGKKYAWQGVALLPFVDEIRLKKALSTVYDD
LTSEEKLRNTRGSDRLFVGCKNPIHSFFDSLYEQNLYSVKSQINPKLADGMAGIVWCDNT
AVLPGHTFFSPLSKLKDFKNQALCVYFTDPQYGDDFLFSAKVLRNAVFPPPSIKPSDYDR
KNRNQPYRPQLGFQRNSGYRETDVNAMVRMIRHSTNQPNQQPTQQGYSGDGARIPPPLEL
YQGRNYNNPPPMLMNWNNDSYNSSGYSGNRYGGGGGYRQQNRGGGGGGYNRRFNPRGGGN
YGYNQNRNKSGWTDQYDQYRDNNSRSYK
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcatttttcagatggctaagccgtaagtatacatcaattgttgtacat
tgtgtggaagagaagccaaaagaaattgaggacacaacagtaccagtagacgctagtaag
ccgaacccgaacgatgttgaatttgataacctatatttagacatgaatggcattattcat
ccatgttgtcaccctgaaaacaaacctgctcccgcaaatgaagacgaaatgatgattgat
atttttgaatatatcgatagaatttttaacatttgccgaccccgtaagcttttgtatatg
gccatcgacggtgtggctccacgtgcaaaaatgaaccagcagcgttcacggagatttcgt
tcttccaaagaagcagttgaaagcgaattcgaaaaatctaaactacgagatgaacttttg
tctaaaggctaccatttaccaccaccgaaagaaaaaggtgaaagattcgatagtaattgt
attactccaggtactccatttatgtttcgtcttgctgaatgtcttcgctattacgtctac
gatcgcttaaataatgcacctggatgggaaaacatcaaagtaattctttctgatgcaaat
gttccaggagaaggagaacataaaattatggattatattcgacgacagagagcccaacct
gaccatgatccaaatacgcatcactgtctctgtggagccgacgctgatttgataatgttg
ggactggcaacacatgaaccacattttactataataagagaagaattcaaatataatcaa
cccagaccatgtgagctatgcgggcagttaggtcatgaaatgacagaatgtgttggatta
ccaaaagaagaatgtgacaaaccacttgaaaaagcattgggttcagaacaagagttcatt
tttatccgattgtgtgtattaagagaacacttacaactacaactccatatggatgggctc
ccctttaaatacgattttgaacgagctgtcgatgactgggtcttcatgtgcttttttgtt
ggtaatgatttcttacctcatctgccatcattggaaatcagagagggagctattgatcgt
cttgttggcatttataaaaggtgtgtttacagaactggaggatatctgactgaggatggt
gtggtaaagttggatagagtacaatttgtactgtcagagttgggaaaagtggaggatgaa
attttcaaaaatcgtcgtcaaagagatattgaatatcggcgccgagaaaagcaaaataag
agagctaaatttggagataaaccaaaatggatgcttggaggacaatatgccccatcagca
gttggaagtaatagggacccagttcaaaatcctcgtcaaacagcagcagatatgcgtaaa
atgacatatggttcaaaacagaatcactctgataattcttccagaaatgaatctgaacga
agccaatctaacaaacgtaagcatgaagacgatgaagaagaagatgagccagcagatgat
gtaaaactctgggaaaatggttggaaggacaggtattataagtcaaaatttgatgttgat
aaggatgatgttgcttttcggcatcaagttgctaatcattatgtacgtggactctgttgg
gttttgaggtactactatcaaggatgttccagttggaagtggtattttccatatcattat
gcaccatttgcctcagattttttaaatgtaggtgatctatcaaatgaatttgaaaaaaac
actgaaccatttaaacctttagagcagctaatgggagtttttccagcagctagtcgtcaa
ttcttacctgttacttggcagcgattgatggttgatgaggattctccagttattgacttt
tatcctactgattttaaagttgatcttaatggcaagaaatatgcttggcaaggagtagct
cttcttccttttgttgatgaaattaggctaaagaaagctcttagcactgtttatgatgat
cttacaagtgaagaaaaacttaggaataccagaggtagtgaccgattgtttgttggttgt
aaaaatccaattcacagtttctttgattctttatacgagcaaaatctatatagtgtgaag
tcacagattaatccaaagttagctgatggtatggcaggtattgtttggtgtgataacact
gctgttttaccaggccacactttcttctcacctctttcaaaattgaaggattttaaaaac
caagcattgtgtgtatattttactgacccacaatatggtgatgactttttgttttctgct
aaagttttgcgtaatgctgttttcccaccaccctcaatcaaaccatctgactatgatagg
aaaaatcgtaatcagccatatagacctcaattaggatttcagagaaactctgggtaccgt
gaaacagatgttaatgcaatggtacgaatgatacgccacagtaccaatcagccgaatcaa
caacctacacaacaaggctactctggagatggtgctaggattcccccacctttggagtta
tatcaaggaagaaattataataatcctcctccaatgttgatgaattggaacaatgacagt
tacaacagcagtggttactctggaaatcgttatggagggggaggaggttataggcaacag
aacagaggtggtggaggcggaggatataacagaagatttaatccgcgaggtggtggaaac
tatggttataaccaaaatagaaacaaaagtgggtggactgatcagtatgatcaatataga
gacaataactccagatcgtacaaatga
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