Octopus bimaculoides (California two-spot octopus): 106870271
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Entry
106870271 CDS
T04127
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106870271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106870271
03012 Translation factors [BR:
obi03012
]
106870271
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106870271
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106870271
Translation factors [BR:
obi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106870271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
HA2_N
nSTAND3
Helicase_C
ATPase
AAA_22
AAA_19
PhoH
ABC_tran
TsaE
Motif
Other DBs
NCBI-GeneID:
106870271
NCBI-ProteinID:
XP_052832619
LinkDB
All DBs
Position
25:32172087..32191947
Genome browser
AA seq
1058 aa
AA seq
DB search
MNLPIFRSMRLSFLALRMSYRERGRRSFDQGYDGGRHGGGGHGRGGRKYQDYDSTDNGRG
RKNFDRGFGGNHMRGNRKHNDQGNNDSADNGPHRHPPGLKGKEIGLWYSRRSRAKKEMQD
KQQRPLIKMDSRQENNIRDILDQFGSGPSSSSHPHQYHPSSHHTTSIRDCRDNNRTQKTS
SDDWFNMDSAHEEETKPNSSKSLESPVWHTSPSRIKENAYNKDSNNDEDEIGHDDNDNVE
MSSQLTERTNSCDILASVTEVMKFYKEETDYGIDPTSDDFVPSSSIKHNPLLDAAYQKDI
QERSKSASYQKMLQFRKKLPSYDMRKELVDKIENNQVVVISGETGCGKTTQVPQFILDDY
LERGMGSKCSIICTQPRRISAVSVAQRVADERDVACGQGSEVGFQIRLERELPRERGSIL
FCTTGIVLKWLESDPSLLRASHIILDEIHERDLLSDFLMVIIKDLLVTRPDIKVILMSAT
LNAEMFSIYFGGAPMINIPGFTYPVKEYYLEDVLEITNYQPPEAKRPKWGMRGMANARKE
EMERQQMKDWIRETLQGSYSPATCHSLASMDHKFIDIELVVELIKHICYKKEDGAILVFL
TGWEEIRKTNDLLNKDPTFNSRICYQHHQEQQQQQLELPSQAIFSSLPLFLFLSITIDDV
VYVIDCGKIKVKHFEPEKNLTSLEPQLVSKANAKQRRGRAGRVQPGECYHLYSTFTESIL
DDYLLPEMLRTRLEELCLQIKLLKLGKIIPFVEKAIQTPSLQALNSAIKILQDLNALDQD
ENLLPLGKHLARMPVDPHSGKMILFGAMFCCLDPILTVAASLSFKDAFVVPLGKEKAADQ
QRKMLAEGSKSDHIMLINAYKGWRKSVAARYDYSYCHQNFLSFNTLKLLKEMKGQFASLI
HQLGFISQPNPSERTANRNSDNLELIKAIICAGLYPNVAKVQKPSMGKRPTLLQTKIEKR
VSLHPKSVNSTESVFESKWLIYHQMLKTSGIYLHDCTIISPYPLLFFGGPIGIKRDGDQD
CITVDEWIVFQASPKTAALVKASISIIIIITITYTQDC
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaccaatattccgttcaatgcgtttatcttttctcgcattgagaatgtcatat
cgggaaagaggtcgccgatcttttgatcagggatatgatggaggaagacacggtggaggt
ggccatggaagagggggtcgaaagtaccaggactatgacagcactgacaatggaagaggt
cgtaaaaatttcgaccgaggctttggtgggaatcacatgagaggcaatcgaaaacataac
gaccaaggcaataatgacagtgcagataatggtcctcacagacatccgcctggcttgaaa
gggaaagagattggattatggtacagtcgacgcagtcgggccaaaaaggaaatgcaagac
aaacagcaacgtccattgataaaaatggacagtcggcaggaaaataacatccgggacatc
ttggatcagtttggatccggtccatccagcagctcccaccctcatcagtaccaccccagt
tctcaccacaccaccagcatcagggattgccgtgacaacaacagaacacagaaaacctcg
tcggacgactggttcaacatggattcagcccatgaggaggagaccaaacccaacagcagt
aagtcattggaatctcctgtttggcacacctcgccttcaagaatcaaggaaaatgcttat
aacaaggacagcaacaacgacgaggatgaaattggtcatgatgacaatgataatgttgaa
atgtcatcgcagttgacagagagaaccaacagctgcgacatattggcttctgtcacagaa
gtgatgaagttttacaaagaagaaaccgattatggaattgatccaacatcagatgacttt
gtgccaagttccagtatcaaacacaatcccttgctggatgcagcataccagaaggacatc
caagaacggtcaaagagtgccagctaccaaaaaatgcttcaatttcggaagaaattgcca
tcgtacgacatgagaaaggaacttgtagataagattgagaacaaccaagtggtggtcatt
agtggagagactggttgtggtaaaacaactcaggtacctcaatttatcttggacgactac
ttagaacgcggaatgggttcaaagtgtagcatcatctgtacacaacctcgccgaatcagc
gccgtttctgttgctcaaagagttgccgatgaacgtgacgtagcatgtggacagggcagc
gaagtgggattccagattcgcttggaaagggagcttccacgagaaagaggatccatactg
ttctgtacgactggtattgttctgaaatggctggaatctgatccatcattactccgtgcc
tcacacatcatcctcgacgagatccacgagcgggaccttctgtctgacttcctcatggtc
atcatcaaagacctcttggtcactcggccggacatcaaagtgattttgatgagtgcaacc
ctcaacgctgaaatgttctccatctactttggtggtgcccccatgatcaacattcctgga
tttacttacccagtcaaagaatactatttggaagacgtcttagaaataacaaattatcag
ccacctgaagccaagcgtccgaaatggggcatgagaggaatggctaatgccaggaaggaa
gaaatggaaagacagcaaatgaaggattggattcgtgagacattacaaggaagctacagc
cctgccacctgtcactcccttgcttctatggaccataaattcattgatatcgaactcgtt
gttgaacttatcaagcatatttgctacaagaaagaggatggtgccattcttgtattcctt
actggttgggaagaaatccgaaaaaccaatgacctcctcaacaaagatcccacattcaac
agccgtatttgctaccaacaccatcaagaacagcaacagcaacaactagaacttccttca
caagccattttctcttctcttcctctctttttattcctcagtattactattgatgatgtt
gtttatgtcatcgattgcggcaaaatcaaagtgaaacattttgaaccagagaaaaatcta
acgtcgcttgaaccccaactggtgtccaaagcaaatgctaaacagcgccggggacgagca
ggcagagtgcagccaggtgagtgttatcacctgtattccacatttactgagtcaatactg
gatgactatctcctacctgaaatgttgagaacacggctagaggaactctgcttacaaatt
aagttattgaagttgggaaaaattattccatttgtggagaaagcaatccagactccatca
ttacaagcattaaactcagccatcaaaatcttacaagacctgaatgctctcgaccaggat
gaaaacctcctgcctctgggtaaacacttggcccgcatgcctgtggacccacattccggg
aagatgatcctgtttggtgccatgttttgttgcctcgaccccatcctcacggttgccgcc
agcttaagctttaaagacgcttttgttgtcccattgggaaaggaaaaagcagcggatcaa
cagcggaagatgttggcagaaggaagcaagagcgaccacattatgttaattaacgcatac
aagggctggagaaagtctgtagctgcacgttatgattactcctactgtcaccagaacttt
ctctctttcaacacacttaagctgctgaaagagatgaagggtcagtttgcatccttgatc
catcaacttggcttcatatcacaaccaaatccatcagagagaactgctaacagaaattct
gataacctggagttgatcaaagccattatttgtgccggtctttacccaaacgttgccaaa
gtacagaaaccttcaatggggaaaagacccaccttactacagaccaagatagagaagagg
gtctctctccacccgaaatctgtcaattccacggaatcagtgtttgaatcaaaatggttg
atttaccaccaaatgttgaagacgtcggggatctacctccatgattgtaccattatctca
ccctacccacttctattctttggtggaccaataggcatcaaaagggatggtgaccaagac
tgcattacggtggatgaatggattgttttccaggcctctccaaagacagcagctcttgtg
aaggcaagtatttctatcatcatcatcatcaccatcacgtatacgcaagattgctaa
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integrated database retrieval system
