Octopus bimaculoides (California two-spot octopus): 106870284
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Entry
106870284 CDS
T04127
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03013
Nucleocytoplasmic transport
obi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106870284
03015 mRNA surveillance pathway
106870284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106870284
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106870284
5.6.2.5 RNA 5'-3' helicase
106870284
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106870284
mRNA cycle factors
Common to processing body (P body) and stress granule
106870284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
Viral_helicase1
NPHP3_N
DEAD
Helicase_RecD
nSTAND3
UvrD-helicase
ATPase
SRP54
AAA_16
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
106870284
NCBI-ProteinID:
XP_052823314
LinkDB
All DBs
Position
4:complement(108333748..108406202)
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AA seq
1131 aa
AA seq
DB search
MSVDTYGPNSQTLSFLDTEETDHLGADTQGSDFYFTDFTLPSQTQSQTQASQLDGGHSQS
QIDVLEGPFQNGLDKNVGAINQGVGELNFEEDEEEQFYMKDLPKHACAYCGIHDPACVVY
CNTTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCATLSSLKDMNWDPSQWQPLIQDRQFLSWLVKVPSDQEQLRARQ
ISAQQINKLEELWKENPEAKLEDLEKPGVDEEPQQVLLRYDDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNIVVRWDVGLNKKRIAYFRLPKANEEMKLMHGDELRLRYLGELHKPWSG
VGHVIKIPDNYSDEVAIELKSNAGVPVECTLNFVVDFVWKSTSFDRMQAALKTFAVDETS
VWGYIYHKLLGHEVEDAVIKCQLPKRFTAAGLPELNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLVKQGNGPVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKKQCEKELLQHADVICCT
CVGAGDPRLAKMQFRSVLIDESTQATEPECMIPVVLGCKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAERTRKTLD
FPWPQLDKPMFFYTTAGQEEISSSGTSYLNRTEAANVEKIATRFLRSSIRPEQIGIITPY
EGQRAYVVQYMQYSGALNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDP
RRLNVALTRARYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGALNNLKESLIQFSKP
RKLVNTTNPGGRFMSNTMFDAREVLIPGSVYDRCGSKPAGKGFNSNFSTGVNIRDPMVRP
HDQLSYIASDRNFAANSLNLPVPVGMFMSPMPHFQNQQGQQQQQQTSGNAVGRGSGLRKN
RPGRQKPPRYSTTQQQNVTQQNVAQASQSQASQEVSQAFSQGPLTQGQLSMSQPFQMSQP
GLSGLSQPELSQDSFLGEDFKSQADGLLSQDSTYQGDRMFYASQLSQGPFH
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacacgtacggcccaaattctcaaaccctttccttcttagatactgaagaa
accgatcatttgggtgccgacacacaaggatcagacttttactttacagacttcacgctg
ccctctcagacccaatcccagacgcaggcttcacaattggatggaggacacagccagagc
cagattgatgttcttgaaggaccatttcagaatggactggataaaaacgtgggagcaatc
aaccaaggtgttggtgagctcaattttgaagaagatgaggaagaacagttttatatgaag
gacttaccaaagcatgcttgcgcgtactgtggaattcatgatcctgcctgtgttgtgtac
tgcaataccacaaagaaatggttttgtaatggacgaggcaacacctctggaagccatatt
ataaatcaccttgtgcgggctaaagccaaagaggtaaccctacataaagatggccctctt
ggagaaacagtcctggaatgttacaattgtggctgccgaaatgtttttctgcttggcttc
atcccagccaaagccgattctgttgtggtgctactctgtcgtcagccctgtgctactttg
agcagtttaaaggacatgaattgggatccaagtcagtggcagcccctcatccaagatcga
caatttctctcttggcttgtaaaagttccatcggaccaagaacaattgagagctcgtcag
atatctgcccagcaaattaataaactggaagagctctggaaggaaaatcctgaggctaaa
ctggaagatttggaaaaacctggagtcgatgaagaacctcagcaagttcttttacgttac
gacgatgcctatcagtatcagaatatatttggtcctttggtcaagctggaagctgattat
gacaagaaactgaaagaatctcagactcaggataatatcgttgtccgttgggatgttggc
cttaataagaagagaattgcctacttccgccttccaaaagctaatgaagagatgaagctg
atgcatggtgatgaactgcggctgcgttacctgggagaattgcacaagccttggtctggt
gttggacatgttattaagattcctgataattatagcgacgaggttgccattgaactgaaa
agtaatgctggtgtgccagtggagtgtacactcaactttgttgtggattttgtctggaaa
tctacttcctttgacagaatgcaagctgctttgaagacatttgctgttgacgagacatct
gtatggggatacatttaccacaaactccttgggcatgaagtagaagatgcagtcatcaaa
tgtcagctacctaaaagattcacagcagctggactcccagaactcaaccattcccaagtc
tatgctgtcaaaactgtacttcagcgaccactcagccttattcaaggccctccaggaact
ggtaaaactgtgacttcagcaactattgtatatcacttggttaagcaaggtaatgggccc
gtactggtgtgtgcaccatcaaatattgctgttgaccaactgaccgagaagatacacaaa
actggtttaaaggttgttcgtctttgtgccaagagcagagaagctattgattctcctgtc
tccttcttagctctacacaaccaaattcgtaatatggacagcatgcctgagcttcagaaa
ctacaacaacttaaagatgaaactggagagttgtcgtcagctgatgagaaacgttaccga
gctctcaagaaacagtgtgaaaaagaactactgcaacatgctgatgtgatttgttgcact
tgcgttggtgctggtgatcctcgattagccaaaatgcagttccgctcagttttgatagat
gaaagcactcaagctactgaaccagagtgtatgatccctgttgttttgggttgcaagcag
ttaatcctggttggtgaccattgccagttaggaccagttgtcatgtgtaagaaagcagct
cgtgctgggctctcccaatcattgtttgagcgccttgttgtgttgggcattcgaccaatt
cgtctgcaggtccagtaccgtatgcatcctgctctgagtgcatttccttccaacattttc
tatgaagggtcattgcaaaacggagtcacagctgctgagagaactcgaaagactctggat
tttccatggcctcagttggataaacccatgttcttctatacaactgctggtcaagaagag
atctcaagttcaggcacgtcgtatttaaacagaacggaggctgccaatgttgagaaaatt
gctacacggtttttgcgttccagcatcagacctgagcagattggaattataacaccctat
gaaggacaaagagcatatgttgtgcagtatatgcaatacagtggtgcactgaacaagaaa
ttgtatcaggaaattgaggttgcaagtgtggatgctttccaaggacgtgagaaagatttt
atcattctgtcctgcgtccgatccaacgaacaccagggaattggttttttgaatgatccc
cgtcgtttgaatgttgccctcacaagagcacgatatggaattataattgttggcaacccc
aaagtactatctaagcaacctctttggaatcatctgcttacatattacaaagaacagaaa
tgtctggtagaaggagccctcaataacctaaaagaatcgctaatccagtttagcaaaccc
aggaaacttgttaacactaccaaccctggtggcagatttatgagcaacaccatgtttgat
gcaagagaggttctaattccaggcagtgtttatgatcgttgtggaagtaaacctgctggc
aagggatttaactctaatttttcaactggagttaatattcgtgatccaatggttcgtcct
catgaccagttgagctatattgcctctgacaggaattttgcagccaattctttgaactta
ccagtgcctgttggtatgttcatgtctcctatgccgcatttccaaaatcagcaaggtcaa
cagcaacaacaacaaacttctggtaatgcagttggacgtggtagtggtttgcgcaagaat
cgacctggtcggcagaaaccaccacgttatagcacaactcaacagcaaaatgttactcaa
caaaacgtggcccaggccagtcaaagtcaagccagtcaggaagtctcacaagcattttca
cagggtcccttgactcagggtcaactgtcgatgagtcagcctttccaaatgagtcaacct
ggtctttcaggactatctcaaccagaactttcacaggatagctttttgggtgaggatttc
aagtctcaagctgatggcttgctttctcaagactccacctatcaaggcgatcggatgttt
tatgcctcgcagctatcccagggtcctttccactag
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