Octopus bimaculoides (California two-spot octopus): 106870388
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Entry
106870388 CDS
T04127
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106870388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106870388
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106870388
mRNA degradation factors
5'-3' decay
Decapping complex
106870388
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
106870388
NCBI-ProteinID:
XP_014771918
LinkDB
All DBs
Position
2:105613436..105638297
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AA seq
409 aa
AA seq
DB search
MRIVGSSVPNINGQRIPHPNDNVRIHRPPHQMRQFNNQNKNNYQQQRGRDNYRERLDTRH
PVDEYAGIMTQKEKEWVIKIQLLQLHTDNPYVDDYYYVRYTLRKSAEERKKKNKENKDEP
KLIIPALAKIETKAYTPAHFEGSLGRVSTSSVHNPRQVIDLVSMAHNDEQGGKSSGRDVY
RYRQMLMEIEKAYVILLDIDDLEKRVLALPEESRKKLYEDRTEKINQLFLNLGTQDNNAD
AFLYMMSIRKGRKLVARCLPIFNSEHSKAVLVTIMKNLTHFIKRDQPEEGLMVLSETVTQ
QIGVCNFKAVVELSQLLLKDTPSLSNKSLVLALQNKFACSVISSLLNRAEMLFLPSSNVE
VDNQLRSAWSQFAQTFVDTLNSMEMSSIAKPFFQNSNFSSIKKPVYLED
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgagaatagttggctcatcagttcctaatattaatggacaaagaattcctcatccaaat
gacaatgtcaggattcacagaccacctcatcaaatgcgtcaatttaataaccaaaacaaa
aataattatcagcagcagcgaggacgcgataattatcgggagcgtttagacacgcggcat
cctgttgatgaatatgctgggattatgacacagaaggaaaaagaatgggttattaaaatt
cagcttttgcagttacacaccgataatccttatgttgatgattattattatgtacgctac
actttaaggaaatcagctgaagagaggaagaaaaagaacaaagaaaataaggatgaacca
aaacttattattccagcacttgctaaaattgaaacaaaagcttatactccagcacatttt
gaaggatctttaggaagagtttccacatcaagtgtccacaatcctcgacaggttatcgac
ttagtttcaatggcacacaatgatgagcaaggtggaaaatcatcaggaagagatgtttac
agatatcgacaaatgttaatggaaattgaaaaagcatatgttattttgttggacattgat
gacctggagaaacgtgttttggccttaccagaagaatcaagaaaaaaattatatgaagac
cgtactgagaagataaatcagctctttttaaatctgggaactcaagataataatgcagat
gcttttctctatatgatgtccatcaggaaaggaaggaaacttgtggctcggtgtcttcct
atatttaattcggaacattcaaaagctgttctagttacaataatgaaaaatttgacgcat
tttattaaaagagatcaaccagaggagggtctaatggttttaagtgagactgtgactcaa
caaattggtgtttgtaattttaaagcagttgtagaactaagtcagttgttgttaaaagat
actccaagtctttccaataagtcattggttcttgccctacaaaacaagtttgcttgttct
gtgattagtagccttcttaacagagcagaaatgcttttccttccatcttcaaatgttgaa
gttgataaccaactccgaagtgcatggtcccaatttgctcaaacttttgttgacacattg
aactctatggaaatgtcatccattgctaaacccttttttcagaattccaacttcagctca
ataaaaaaaccagtgtatttagaggattag
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