Octopus bimaculoides (California two-spot octopus): 106870639
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Entry
106870639 CDS
T04127
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106870639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106870639
03041 Spliceosome [BR:
obi03041
]
106870639
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106870639
Spliceosome [BR:
obi03041
]
Complex B
Other components
Prp19-related factors
106870639
Complex C
106870639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
ARM_TT21
PPR
SNAP
NRDE-2
ATG1-like_MIT2
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
106870639
NCBI-ProteinID:
XP_014772269
UniProt:
A0A0L8HIW2
LinkDB
All DBs
Position
1:152497901..152530656
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AA seq
847 aa
AA seq
DB search
MPTSALKDIYFEEDDLPYEEDILRNPYSVKCWLRYIEHKKEAPKNVINMIYERAIKEMPG
SYKLWYNYLKLRCRQIRGRCISDPAHDDVANAYERSLVFMHKMPRIWLDYCQLLMDQCKI
TSTRYTFDRALRALPITQHHRIWPLYLQLVTMYPLPETAVRVYRRYLKLKKEDTEQYIDY
LISIDWLDEAAQRLATIINDEQFVSKKGKSKHQLWNELCDLIAKHPDKVTSLKIEPIIRQ
GLKLYSDQIGVLWNSMADYYIRGGHFERARDIYEEAIQTVVTVRDFTQVFDAYAQFEKNM
VSAKMEAMSDSGTSQEDDLDVELRLARLEHLMDRRPRLLNSVLLRQNPHNVHEWHKRVKL
FEGKPREVINTYTEAVQTVDPKLATGKLYTLWVEFAKFYENAQQIDDARIIFEKAIKVPF
KHVVDIASVWCEWAEMEIRNENYDNTLKLMQRVTTPPSRKISYHDETETVQDRVHKSLKV
WSFYADLEESFGTFKSCKAVYDRIIDLRIATPQIIINYGMFLEENNYYEEAFKAYEKGIA
LFKWPNVYDIWNTYLTKFIERYGGKKLERARDLFEQCLEGCPPKYAKAIYLLYSKLEEEH
GLARHAMKVYDRAIEGVLEEEKHEMFNIYLKKAAEIYGVTHTRSIYEKAIEILADNQSRE
MCLRFADLERKLGEIDRARAIYGHCSQMCDPRITPDFWKTWKEFEIKHGNEDTVREMLRI
KRSVQATYNTQVNFMSAQMLAATNTKGDEPNTEVNEMKKLEEKARQLAEEAVSDQIKPDK
GILFVRSNTTDEDLGEYTKTTNPDEINIDDDFDTDEDEEIEEVNLQQQAVPAEVFGSLAS
EENENDE
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgccgacatcagcattaaaagatatatattttgaagaagatgatcttccttatgaggag
gatatccttcgaaacccctactctgtcaaatgttggcttcgttatattgaacacaagaaa
gaagctccaaaaaatgttataaacatgatatacgaaagggccattaaagaaatgcctgga
agttataaattatggtataattacttaaagcttcgatgcaggcaaatccgtggtcgctgt
atcagtgaccctgctcatgatgacgtggctaatgcatatgaaagatctttggtcttcatg
cataagatgcctcgtatttggcttgactattgccaacttcttatggaccaatgtaaaatc
acctccactagatatacatttgatcgagctttgcgtgctctcccaatcactcaacaccat
aggatatggcctctatatttacagctggtaactatgtatcccttaccagaaacagctgtc
agggtctatcgacgatatttgaagcttaagaaagaagatactgaacaatatattgattac
ctaatatctattgattggcttgatgaagcggcacaacgtctagcaactattataaatgat
gaacagtttgtctcaaaaaaaggaaaatctaaacatcaattatggaatgagttgtgtgac
ctaattgcaaaacatcctgacaaagtaacttctctaaaaattgaaccaattattcgacaa
ggtctcaaattgtattctgatcaaattggagtcctttggaattcaatggctgattattac
attcgaggtggacattttgaaagagctcgtgatatctatgaagaagctattcagacagtc
gtaacagtcagggattttacccaggtatttgatgcatatgctcagtttgagaaaaatatg
gttagtgcaaaaatggaagccatgtctgattcaggaacatctcaagaagatgatcttgat
gttgaattacgattagcaaggctggaacatttgatggataggcgtcctcgtctcttgaac
agtgtgttactacgtcagaatccacataatgtccatgaatggcacaaaagagtaaaacta
tttgaaggaaaacctcgagaggttatcaatacttatacagaagctgtccaaactgtggac
ccaaaactagccactggaaaattatacactctttgggtggaatttgctaaattttatgaa
aatgctcagcaaattgatgatgctagaataatcttcgagaaagctatcaaagtaccattc
aaacacgttgtagatattgcctcagtttggtgtgaatgggctgaaatggaaattcgtaac
gaaaattatgacaatactctaaaattaatgcaaagagtaactacaccaccttcacggaaa
atttcttatcatgatgagactgaaacagtccaagatcgtgtacacaaatcgctaaaagtg
tggtcattttatgcagatttggaagagtcatttggtacatttaagagttgcaaagctgtt
tatgacaggattattgatttaagaattgctacaccacagattatcatcaattatggcatg
tttcttgaagagaacaactactatgaagaagcatttaaagcttacgagaagggaattgca
ttgtttaaatggcctaacgtttatgatatatggaatacatacttaacaaagtttattgaa
agatatggtggtaaaaaacttgagcgggctcgtgatctttttgagcaatgtctagaagga
tgcccacctaaatatgctaaagctatttatttgctctactctaaattagaagaagaacat
ggccttgctcgccatgcaatgaaggtgtatgacagagcaattgaaggtgtacttgaagaa
gaaaaacatgagatgttcaacatttacctcaagaaagcagctgaaatttatggtgtgact
cacactcgaagtatctatgagaaagctattgaaatattagctgataatcaatctcgagaa
atgtgtctaagatttgctgacttagagcgaaaacttggggaaatagatcgtgcccgagct
atatatggtcactgttctcaaatgtgtgatcctagaattacgccagacttctggaaaacc
tggaaagagtttgagattaagcatggcaatgaagacactgtacgtgaaatgttacgaatc
aagagaagtgtacaagcaacttataacacacaggttaatttcatgtctgctcaaatgcta
gctgcgacaaatacaaaaggagatgaaccaaacactgaagtaaatgaaatgaagaaactt
gaagagaaggcccgtcaactcgctgaagaggctgtctcagaccagatcaaaccagacaaa
ggaatcttgtttgtgaggagcaacactacagatgaagatttgggagaatataccaagaca
acgaatcctgatgaaattaatattgatgatgactttgatactgatgaagatgaagaaatt
gaagaagtgaatcttcaacaacaagctgttcctgctgaagtttttggaagtcttgcttct
gaagaaaatgaaaacgatgaatga
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