Octopus bimaculoides (California two-spot octopus): 106871336
Help
Entry
106871336 CDS
T04127
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106871336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obi03021
]
106871336
03036 Chromosome and associated proteins [BR:
obi03036
]
106871336
Transcription machinery [BR:
obi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106871336
Coactivators
SAGA/TFTC/STAGA complex
106871336
Chromosome and associated proteins [BR:
obi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
106871336
STAGA complex
106871336
TFTC complex
106871336
SAGA complex
106871336
SLIK complex
106871336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
RMC1_N
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
WD40_like
WD_LRWD1
eIF2A
WDR54
Beta-prop_WDR75_2nd
Cytochrom_D1
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
106871336
NCBI-ProteinID:
XP_014773222
UniProt:
A0A0L8HDI8
LinkDB
All DBs
Position
10:complement(84907423..84927331)
Genome browser
AA seq
663 aa
AA seq
DB search
MASTTVNDSVDAQKPENFDKQTLLAVLQFLRKSNLKSTESLLRQEANIKDEDVKIESAEP
SESEVSHALAAYKSEDDPTLYDDYYTDLMNFIESCLDVHKVEVSVILYPIFVHMYLELVY
NEHEAHAKEFFDKFFKYQEKYYSEDLMKLSTLSKKEHMKGNTLMENFKSSSFSIKMSRDS
YNQLKRHLQDKQLNLLLNIIQEHLFIDVYDGVPRTKQQIDAVAGGFLGEAKREANKSRMY
YGLLKEPELNIPVEDEDEAGDDDKPKKKKPKKDPLQLKKSKNDPNAPSNARIPLPELKDL
DKLEKINAFRETMKRIKLGPDTMPSICFYTFMNSYQGVTAVDFSDDSSLLCAGFGDGVIR
VWALTPAKLRNVKTSNELNIIDKEADDVLERMMDDRSSTDAKTLLGHSNSIHSVSFSPDR
NFLVSSAADGTIRLWSLMTWSNLVCYKGHNYPVWDVKFSPHKMYFASAGHDRTARLWSTD
HPQPLRIFADHLCDVDCVQFHPNSNYIATGSSDRAVRVWDVLTGDCIRFMTGHKASIHVL
QFSPDGRYLASAGVDKVIHLWDMANGNLVAQLKGHSSTVYSLCFSKEGAILASGGLDNSV
KLWDVTKVFEDQDSDGDTNIPSTIHVNDNPNLLLGTFPTKSTPVLGLHFTQRNLLLATGP
FIP
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcactaccgttaatgatagtgtagatgcacagaagccggagaattttgataaa
caaacccttttagctgttttacaattcttgcggaaaagcaatttaaagagtacagaatcc
cttcttcgccaagaagctaacattaaagatgaagatgttaaaatcgaaagtgcagaacca
agtgagtctgaagtgtcccatgctttggctgcctataaaagtgaggatgatccaaccctc
tatgatgattattatacagatctgatgaattttattgaatcttgtttagatgttcataag
gttgaagtgtcagtgatactgtaccctatctttgttcacatgtaccttgagttggtctac
aatgaacatgaagcacatgctaaagaattttttgacaaattcttcaaatatcaagaaaaa
tactatagtgaagatttaatgaagttgtcaactctctccaaaaaggaacatatgaaagga
aacactcttatggaaaacttcaaatcaagcagctttagtataaagatgtcacgtgactct
tacaaccaattgaaaagacacctacaggacaaacaactgaatcttttgttgaatattatc
caagaacatctttttattgatgtttatgatggagtacctcgtacaaagcaacagattgat
gccgtagctggaggctttctgggagaagcaaaaagagaagccaacaaatcaaggatgtac
tatgggttactcaaagaaccagaacttaacattcccgtagaagatgaagatgaagcagga
gatgatgataagccaaagaaaaaaaaacctaagaaagaccctctacagttgaagaaatcg
aaaaatgatccaaatgctccatccaacgctaggatacctcttccagaattaaaggatctt
gacaaactggaaaaaatcaatgcttttcgtgagaccatgaagagaatcaagcttggccct
gatacaatgccatcaatttgtttctatactttcatgaactcctaccaaggagttactgct
gtagatttttctgatgactccagcctattatgtgctgggtttggtgatggagtgatacgt
gtgtgggctttgacaccagcaaagctacgtaatgttaaaacttcaaatgaattaaatatc
attgataaagaagctgatgatgttctagaaagaatgatggatgataggtcaagcactgat
gccaaaacactgcttggtcatagtaactctatccattcagtcagtttcagccctgatcga
aactttttagtctcttctgctgccgatgggacaattcgcctttggagtttaatgacctgg
tcaaatttagtctgctataagggtcacaattatcctgtatgggatgtcaagtttagtcct
cataaaatgtattttgcttccgctggtcatgaccgtactgctcgtctttggtcaacagac
catccacaacctttgcgaatatttgcagaccacttatgtgatgttgattgtgtccagttt
caccccaattccaattatatagctactggttctagtgaccgagcagttcgagtctgggat
gtcctaactggagattgcattcgctttatgactggtcataaggcctcaatccatgtcctg
cagttttctcctgatggacgttaccttgcttcagcaggtgttgataaagttattcattta
tgggacatggcaaatgggaacctggttgctcaactgaagggacactcaagcacagtgtat
tcattatgtttcagtaaagaaggagctattctggcctctggtggcctggacaattctgta
aaactgtgggatgtaacaaaagtttttgaagatcaagattcagatggtgacactaatatt
ccaagcacaattcatgtcaacgacaacccaaatttacttcttggaactttccctactaaa
tcaacgcctgttttaggcctacattttactcagcgaaatttacttttggccacaggtcca
tttataccataa
DBGET
integrated database retrieval system
