Octopus bimaculoides (California two-spot octopus): 106871729
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Entry
106871729 CDS
T04127
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
obi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106871729
09123 Folding, sorting and degradation
03018 RNA degradation
106871729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106871729
03041 Spliceosome [BR:
obi03041
]
106871729
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106871729
mRNA degradation factors
5'-3' decay
Lsm complex
106871729
Spliceosome [BR:
obi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106871729
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Mlf1IP
Motif
Other DBs
NCBI-GeneID:
106871729
NCBI-ProteinID:
XP_014773827
LinkDB
All DBs
Position
2:complement(161597394..161654756)
Genome browser
AA seq
90 aa
AA seq
DB search
MATTFTNPSQLLPLELVDKCIGSRIHIIMKNDKEIVGSLQGFDDFVNMVLEDVLEFESTP
EGRRVTKLDQILLNGNNITMLVPGSEGPET
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atggcgactacttttaccaatccttcccagttgttaccgcttgaactggtagacaaatgt
attggatctcgcattcatatcatcatgaaaaacgacaaggaaattgttggttccttgcag
ggatttgatgactttgtcaatatggtgcttgaagatgttctagaatttgaaagcacacct
gaaggacgtagagttacaaaattagaccaaatattgctaaatggcaacaacattaccatg
ttggtacctggtagtgagggtccagaaacttga
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