Octopus bimaculoides (California two-spot octopus): 106872060
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Entry
106872060 CDS
T04127
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03022
Basal transcription factors
obi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106872060
09124 Replication and repair
03420 Nucleotide excision repair
106872060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obi03021
]
106872060
03400 DNA repair and recombination proteins [BR:
obi03400
]
106872060
Transcription machinery [BR:
obi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
106872060
DNA repair and recombination proteins [BR:
obi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
106872060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
DUF3334
Motif
Other DBs
NCBI-GeneID:
106872060
NCBI-ProteinID:
XP_014774390
UniProt:
A0A0L8H913
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Position
13:complement(33015872..33054287)
Genome browser
AA seq
555 aa
AA seq
DB search
MAKTSEEVLLIINHVRHKKMDGSLYLMGERLAWMQVHKNSFSISHPYSDIKVQKISPGSK
EKVQLQILMHDGTANTFHFNHSQGREAQIRDRDAIKELLQQLLPQFRQKVNSELEEKNKL
LQEDPKLFQLYKDLVVSQLMSAEEFWANHSAKFSNSNNDKNQTVGVSAAFLADIKPQTDG
CNGLRYNLTPDVIESIFKTYPMVKKKHAENVPHKSSENEFWTKFFQSHYFHRDRINIGNK
DMFSECAKNDEDEIKQDIDRNVSDPFLDLTQIKDTSLGEGYGAMNEESQASTNLANLSII
RRFNYHSTMVLKTCQAQSRETAANASGDVSSTSLNGSDQTATKSKLNPSDASDQPTEKKA
RIMEKIHYTDLEEDTSSSATSLSLTKMERYLHGPTPISASLYSTNDNVVQAAQMVHQKLP
HWLPALSQVLPVHLALSVLGELSPGGSLMQRTSQQDLQQIIPFDTQEELQQIYSALCELL
RHFWSCFPASSKFLEEKVIKMKSTLERFHINKLNAFKEHLISQHYSINLTGHMEEMLNAA
YNKFETWQSKRLAKR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggctaagacttcagaagaggttctgttgatcataaaccatgttcgccacaagaagatg
gatggttcactttatttgatgggggagcgacttgcctggatgcaagtgcacaaaaattcc
tttagtataagccatccatactcagacattaaggtacaaaaaatttcccctggttctaaa
gagaaagttcagctacagattttgatgcacgatggcacagccaacacgttccacttcaac
cattcacagggtcgtgaagcgcagatcagggacagagatgctattaaggaacttctccag
caattattaccacagtttcgacagaaggttaacagtgagttggaggagaaaaataagctt
ttgcaggaagatccaaaactctttcagctctacaaagatcttgttgttagccaactgatg
tctgctgaagaattctgggctaaccattcagcaaaattttccaattctaataatgataag
aatcaaactgttggtgtttctgctgcttttttagcagatatcaaaccacagactgatgga
tgtaatggactcagatacaaccttacaccagatgttatagaatcaatttttaagacttat
ccaatggttaagaagaaacatgcagaaaatgttcctcacaaaagttcagaaaatgaattt
tggactaagttttttcagtcccattatttccaccgtgatcgcatcaatattggtaacaaa
gatatgttctcagaatgtgctaaaaatgatgaagacgagatcaaacaagacatagatcgt
aatgtgagcgatccgttcttggatttaactcagatcaaagatacatccttgggagagggt
tatggtgccatgaatgaggagagccaggccagcacaaatctggctaatctttcaataata
cgacgctttaactaccattccacaatggtgctcaaaacttgccaagcacaaagccgggag
acagcagccaatgcttctggtgatgtctcttcaaccagccttaatggcagtgaccaaact
gccacaaaatcaaaactgaacccttctgatgctagcgaccagccaactgaaaagaaggct
cgaatcatggagaagattcactacacagaccttgaggaagacactagctcatctgcaact
tcattgagtttgacaaaaatggagcgctatctgcatgggccaacacctatatcagcatct
ctatattcaaccaatgacaatgttgttcaggcagctcagatggttcaccagaaattgcct
cattggttaccagctttgtctcaggttcttccagttcatttagctctcagtgtgttggga
gaactctctcctggtggaagtttgatgcaaagaacaagtcagcaagatctacaacaaata
attcctttcgatactcaagaagaactccaacagatctacagtgcattgtgtgaactattg
agacacttttggtcctgttttccagcatcttccaagttcttagaagaaaaggttatcaag
atgaagtcaactttggagagattccatatcaataaactgaacgcattcaaagaacatttg
attagtcagcattattccattaatcttactggccacatggaggagatgttaaatgctgcg
tacaacaaatttgaaacttggcagagcaaacgccttgccaagagatga
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