Octopus bimaculoides (California two-spot octopus): 106872665
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Entry
106872665 CDS
T04127
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
obi03009
]
106872665
03012 Translation factors [BR:
obi03012
]
106872665
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106872665
5.6.2.5 RNA 5'-3' helicase
106872665
Ribosome biogenesis [BR:
obi03009
]
Eukaryotic type
Other ribosome biogenesis factors
106872665
Translation factors [BR:
obi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106872665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
ResIII
zf-AN1
Viral_helicase1
DEAD
nSTAND3
AAA_22
Helicase_RecD
AAA_16
IstB_IS21
PhoH
Flavi_DEAD
SRP54
SLFN-g3_helicase
UvrD-helicase
AAA_25
NPHP3_N
AAA_5
T2SSE
AAA
AAA_7
DnaB_C
ABC_tran
ATPase
UvrD_C_2
cobW
DUF3201
AAA_31
Motif
Other DBs
NCBI-GeneID:
106872665
NCBI-ProteinID:
XP_052828218
LinkDB
All DBs
Position
13:complement(53061145..53079218)
Genome browser
AA seq
1010 aa
AA seq
DB search
MVEEFVSKTLALLEEERNAEIKENSYFYEKLPPKQLEKKGVCLLKLHLASQASGFYGRMI
VTLEPWMKKELPSHSFTPGDIVQLSLNQKNAAQSENIAVGIVSKTTSNSISVAFDEYKDI
ETMSSDAHYKLLKIANDVTYKRLKSAVSGLHKAGNGRASDLLDILFNHKFIPSEKCHDFT
FYNTNLDESQREAVKFAINQKNIAIIHGPPGTGKTTTVIEILLQAVKQKQKVLVCAPSNI
AVDNLVDRLALLKQNILRIGHPARQLPHLQKYCLDAILSSSDGGKLIMDVKKDLDKAYNQ
LLKSNKGGEKYKYREEIKVLRKELHQRTLQSSTEILKRADIILSTLTSASDDGPLKELKY
NYFDMVIVDECSQATEAACWIPIPRAPKCVLAGDHCQLPPTIISKEAASAGLEITLMERV
LKEYGNKVKKMLATQYRMHQHIMEWSSKQLYDNELIADSSVKNHLLKDLDRIEENELTTE
PLILIDTAGCNLPELEVPEEISKGNEGEAEIVNYHVRKLISSGLSVEEIAVIAPYNLQVE
LLRLKMSSDYPKLEIKSVDGFQGREKEAVVISLVRSNQKGDVGFLSESRRINVAITRARR
HLTVVCDSETMRHDKFLSSLMDHFFDKGFVYSANQYLNGLYSCKRGACVFVSCLRGLWLI
CSLVWITVLTFYYFSKISKADKDAKRHNELHKTLTDFSKNSEETAKIFPSTLNSFERMLV
HEIANKLGLIHISEGDGKDRQIIVKKSDDEQQVISHNDTLENNPSKYLVDNEPGDSCTGM
STVSSSNCDDDTTTNQAMSIDSSELLDESLLMTEKQDKKTKKVKKQNKSVPVFDFDKPAE
DTEICSYCLRQILKSNYDLHILHCSKSRKTNTKNSKPTQKTKVKAKSDKMTKALNNVDPD
DFDALISAAMEVNNKCSFPKCKEKTHVLRIHCEFCRLHYCISHSMPEIHGCGAEAKVQAR
KIISRDGVIYSGSGVPSKLPNAVKSARLQSKLDKKLTEMSDQRKQKQKKS
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggttgaagaatttgtctcaaaaactttggcacttcttgaagaagagcgaaatgcagaa
ataaaagaaaatagctatttttatgagaaacttcctccaaaacaattagaaaagaaagga
gtctgccttctaaagctgcaccttgctagccaggcatctggtttttatggtcgtatgatt
gttacacttgaaccatggatgaagaaagaactaccatctcattcatttacaccaggtgac
attgttcagctcagtttaaatcagaaaaatgctgcacagtctgagaatattgcagttggt
attgtttccaagaccacctctaacagtatttcagtagcatttgatgaatataaagacata
gagaccatgtcttctgatgctcattataaacttctcaaaattgctaatgatgtgacttat
aagagattaaaaagtgctgtaagtggattacataaagcaggaaatggaagagccagcgat
ttattggatattttatttaatcataaattcattccttcagaaaaatgtcatgattttaca
ttttacaatacaaatcttgatgaatctcagagagaagctgtgaaatttgcaataaatcaa
aagaatatcgctataattcatgggccacctggtacaggaaaaactaccacagttattgag
attttgttgcaagctgtcaagcagaaacaaaaggttcttgtgtgtgcaccctctaatatt
gctgtggataatcttgtggacagattagccctgctgaaacagaatattcttcgtattggt
catccagctcgtcaattgccacatctacaaaaatattgtttagatgcaattctttcatca
agtgatggtggaaagctaatcatggatgtcaagaaggatttggataaagcttataatcaa
ctcctgaaatcaaataaaggtggagaaaaatataaatatagagaagagataaaggtcttg
cgaaaagaacttcatcaaagaacattacagagtagcactgaaatcctaaagcgtgctgat
attatcctatccaccttaacaagtgcatctgatgatggaccccttaaagaattgaaatat
aattattttgacatggttatcgttgatgaatgttcacaggcaactgaagctgcctgttgg
ataccaattcctcgagctcctaaatgtgttttggctggagatcactgccagcttccacct
actattatatcaaaggaggcagctagtgcaggtttagagataacactgatggagagagtc
ttgaaggaatatggaaataaagtaaagaaaatgttagccactcagtaccgaatgcatcag
catattatggaatggtcatcgaaacagctgtatgacaatgaactcattgcagattcttct
gttaaaaatcatcttctgaaggatttggacagaatagaagaaaatgaactaactacagaa
ccactaatattgattgacactgctggttgtaatctgcctgaactggaagttccagaagaa
atatcaaagggcaatgaaggggaggctgaaattgttaattaccatgtaaggaagcttata
tctagtggtctttcagttgaagaaattgcagttattgcaccatacaaccttcaggttgag
ttactgcgactgaaaatgagttctgattatccaaaattggaaataaagtcagttgatggt
ttccaaggccgagagaaagaagctgttgttatttccttagtgaggtcaaatcaaaaagga
gatgttggttttctatcagaaagcagacgtataaatgtagcgataacaagagcccgccgt
cacttaactgttgtttgtgacagtgaaactatgagacatgacaaatttctgtcttcgtta
atggatcatttcttcgataaaggatttgtttattcagcaaatcagtatttaaatggtttg
tattcatgcaaaaggggagcttgtgtctttgtttcttgtctgcgaggattgtggctcatc
tgctcattagtttggattacagtccttactttttactatttcagcaaaatatctaaagcc
gacaaggatgcgaaacgacataatgagctgcataaaactctcacagatttctcaaaaaac
tcggaggaaactgcgaaaattttcccatctacactgaattcttttgaaagaatgttggta
catgaaatagccaacaaattgggtttgatacatatcagtgaaggagacggcaaggacaga
caaataattgttaaaaaatcagatgatgaacaacaagtaattagccataatgatacactt
gaaaataacccttccaaatacttggttgataatgaacctggagatagctgtacaggaatg
tctactgtttcttcctctaactgtgatgatgatacaacaacaaaccaagcaatgtctatt
gattcaagtgaattgttggatgaatcactacttatgacagaaaaacaggataaaaaaacg
aagaaagtaaagaaacaaaataaatcagtgccggtttttgattttgataaacctgcagag
gacactgaaatttgttcttattgtttacggcaaattttaaaaagcaattatgacttgcat
atccttcattgttccaagagtagaaaaactaacactaagaattctaaaccaactcaaaag
accaaagttaaagccaaatctgataaaatgacaaaggctctaaacaatgttgatccagat
gactttgatgctttaatatcagcagctatggaagtaaataataaatgtagtttccctaaa
tgtaaagaaaagacccatgtactgcgtatacactgtgaattttgcaggcttcattattgt
atatctcacagcatgccagaaattcatggctgtggagctgaggcaaaagttcaagctcgt
aaaataatttctcgtgatggtgtaatatatagtggaagtggtgttcctagcaaattacca
aatgcagttaaaagcgctcgtcttcaaagtaagttagataagaagttgacagaaatgtca
gaccaacgtaaacaaaaacagaagaaaagctaa
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