Octopus bimaculoides (California two-spot octopus): 106873142
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Entry
106873142 CDS
T04127
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13191
RNA-binding protein 16
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obi03021
]
106873142
03041 Spliceosome [BR:
obi03041
]
106873142
Transcription machinery [BR:
obi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106873142
Spliceosome [BR:
obi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
106873142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
106873142
NCBI-ProteinID:
XP_052830489
LinkDB
All DBs
Position
18:complement(9742608..9796902)
Genome browser
AA seq
1620 aa
AA seq
DB search
MEAVRAFNNELSGLYEAKPPVSRAKMAQLTKCAIKAIKFYKHVVQSVEKFIQKCKSEYKV
PGLYVIDSIVRQSRHQFGAEKDVFAPRFTKNVVLTFQNLFKCPPDEKSKVVRVLNLWQKN
AVFPVEVIQPLLDLAGEPTNPELIASAQRAVDGLVAVSQKSGNATNQFSGEHHLHEAAGQ
ARHEKELPSASSLLEAQNDMLDTVKQLLQQTQKQPTSLSAQQQQLQQLQLLQQQLLQQTE
LMQQPAQQQQAAAIIDSNLLSQIQTLTNQLLNNQIKTLHSKPPDYSNKQQKEWFLHNTFV
WNVLLKLLDFDYGESDDEEDKHEDNSDGIPGNVQNILNDPTIMQQIHQMSQTIKKTEQLK
NELNMQEQIRQQLLKQQEKEFNQQISQEPPPQIQHHIPVAPQMPPQPPPPSQIIQNQPPP
MHPQMPYYVSEPPYPAPSNQNDLSERMELDNRHDRHYGDVPNAEVIVIDDQPDIHKTSRN
RDRSRSRSPRRKKRSRSRSRERRRRSRSRDRDRDRDRSDRERDRDRRKRSRSRERERERQ
REKERERRRKGLPSIKERHLSVCTRTIWLGHIAKVTSEDELRLEIEKYGAVESINMIPPR
GCAFVCMARRKDAPKAVEKLKGVKIHSNQLKVAWAPGIGVKDAEYKDMWDAELGVTYIPW
EKLPQDLTHLMEGGMIDEDTIPEHLKAGLQLEKTEPTGTNNIEEPQQNFKMNEVNITNPP
IAVPPPTAIPPQQPPLQGQPMPRMLMQIPPPTGMMPPMMMPLAPGMPRPPTTGVPPPPLG
MAPASTASAVLAPRPVPPVPTAAGVSISLPTMAPTVVLTTVASNNPAMPSLPPPGLVQLP
QTLQNNLSSSILATGGISVPPRPPPPNFAAQLRQQPRPFPPQPFPGGPTFRLQVPTPTPE
GARAIANIRPPLDTNATLPAQESKENINESSQQDDWLKRSTEATSDDAETETKHEGITPQ
TIEPTSEVLPTPTGTMPAISATLQQMLAQRPPPNPAVGMRPPLPPGMAPRPGINGPPTEL
RLGGPSGPLLTGPPNRATAIGIPGMPAGIAIGPRAISVDGPPPGFPAGRMGLPGGPRFTP
RFPPVFPGGPPPRFQGPMGTMLRPPRPDADGRFPANTFTNNGTFDRAGFERAIRPFGPIG
PRPDRPANDRWMGRDRWAPRDTGPGMRFRRDFDQRDEFFDRSRYVLDNRDPDRNAGGRRM
SRFDGEEDHEGERPPHHYEDDRSLHEDEHARHGDDRDRSRRDDERDRLRHVDERDRLRRP
DERERTRHEDDRNRLRYEVRDRFRFGDNGREGAEGIRPRNREDRPRKSRWSDVDDKAVET
PSMEAPSLETIKAFDTIPENANALPDTNAEESVAMEISNAPGNVTPTCEELEDAVNSSQP
ENYTASEDFIPTEEFSLTEKYHSAEEQTPDDQQPPPMSGSPPEEPPVDSFIPTDSCPPAE
DFTPMESDAPVENFEAPTPENFLLQHGDDDDVNDDDNNNNNYFNDDGVDDNNNNNNNNNN
NNDNDDINNINDDDNDIDISNNIALLSENETPSFAESSSPPPVPEEEFSSTENFIPAHTE
EFTPMKNCSPEEPMNEADEFPPAEDEVSEMIKAEEPEYPTGEESPLQSEEQTTACDENDE
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgtgagggcgttcaacaatgagttatctggtctttatgaagctaagccgccc
gtgtctagggcaaaaatggcccagctgactaaatgtgccattaaagccatcaagttttat
aaacatgttgtacaaagtgttgagaaattcattcaaaagtgtaaatccgaatacaaagtt
ccaggattatatgtgatcgactccattgtgcggcagtctcgacaccagtttggtgctgag
aaagatgtatttgcacctagatttaccaaaaatgtagtgctgacatttcaaaatctcttc
aaatgtcctcctgatgaaaagagcaaagttgttcgtgtattgaatttgtggcagaaaaat
gctgttttccctgttgaggtcattcagcccttgttggatctagctggggaacctaccaat
ccagagttaatagcttcagctcagcgagcagttgatggccttgtggctgtaagtcaaaag
tctggaaatgctaccaaccagttttctggagaacaccatttacatgaagctgctggtcag
gctcggcatgagaaggagttaccatcagcaagttctcttctggaagcgcagaatgacatg
ctagacaccgtgaagcaattacttcagcaaacacaaaagcagccaacaagtctgagcgct
cagcagcaacagcttcaacaactgcaactcctccaacagcagttactacagcagaccgag
ctgatgcagcagccggcccaacagcagcaggcagcagcaattattgatagtaaccttttg
tcacagatccagactttgacaaatcagttgctcaacaatcaaatcaagactttacactct
aaacctcctgactattcaaacaagcaacagaaagagtggtttcttcataatacttttgta
tggaatgtgttattgaagttgctggactttgattatggggaaagtgatgatgaggaagac
aagcatgaagataactctgatggcatccctgggaatgtccagaatattttgaatgatcca
acaattatgcagcagatccaccaaatgtctcaaaccatcaagaagacggaacaactaaag
aatgaactcaacatgcaggaacagatacggcagcagcttttgaagcagcaggagaaagag
tttaatcaacagataagtcaagagccacctccacaaattcaacatcatatccctgtggca
ccgcagatgccgcctcagccacccccgccgtcgcaaataatccaaaaccaaccccctcca
atgcatccacaaatgccttactatgtttctgaacctccatatccagcaccatcaaatcag
aatgatctctcagagcgtatggaattggacaaccgacatgaccgtcactatggcgacgtg
cctaatgccgaggtgatagttattgatgatcagcctgatatccataaaacctctcgcaac
agggatcgatcaaggtccagatcacctcgacgcaagaagagatctaggtcaagatctcgg
gagaggcggagacgatctcgttctcgagatcgtgaccgagacagggatcgaagtgacaga
gaaagagacagagaccggcgcaagcgatcaagatcacgggaaagagaaagggagcgccag
cgagaaaaagaacgggaacgcagaagaaaggggcttccatccattaaagagagacacctt
agtgtgtgtacaagaactatatggctgggtcatatagccaaagttacttctgaagatgaa
ctgcgactagaaattgaaaagtatggtgctgtggaaagcataaatatgattcctccccga
ggatgtgcttttgtatgtatggcaaggagaaaagatgctcctaaagctgtggaaaaattg
aagggagtgaaaatacattcgaaccagttaaaagttgcctgggctcctggaataggtgta
aaggatgcagaatacaaagatatgtgggatgctgaattgggtgtaacttacattccttgg
gagaaattgccacaagatttgactcacctaatggaaggtggcatgatagatgaagacact
attcctgaacacctcaaagctggtttgcaacttgagaaaacagaaccaactggaacaaac
aacatagaagaacctcaacagaattttaagatgaatgaagtgaatataacaaaccctcca
atagcagtccctcctccaacagcaatacctccacaacagcctccactgcaagggcaacct
atgccaagaatgttaatgcaaattccacctccaactggcatgatgcctccgatgatgatg
ccacttgctccaggaatgcctcgcccaccaaccacaggtgtacctccgcctccattagga
atggcaccagcatcgacagcctcagcagttcttgctcctcgacctgtacctccagttcca
actgctgctggagtgtctatatctttgccaacgatggctccaactgttgtattgactaca
gtggcatcaaacaatcctgccatgccttctctaccgccaccaggtttagtgcagcttcca
cagactcttcagaataacttgagcagttccattcttgctacaggtggcatatcagttcct
cctagaccacccccacctaatttcgcagcgcaacttcgacaacagcctaggccattccca
cctcagccttttcccggaggtccaacgtttcgcttgcaagttccaacacctactccggag
ggtgctagggctattgctaatattagacctccccttgacacaaatgctactttgcctgct
caagaatccaaagaaaatattaatgaatctagtcagcaggatgattggctgaagcggagc
acagaagcaaccagtgatgatgcggagaccgaaacgaaacacgaaggtatcacccctcag
actattgaaccaacttccgaagtgttaccaacacccacaggaacaatgccagctatatct
gcaacattacaacaaatgcttgcccagcgtccacctccaaatccagcagtagggatgcgc
ccccctctgccacctggaatggcaccacgccccggtatcaatggcccacctactgaactt
cgtctcggtggaccaagcggacctcttctaacaggcccacctaaccgagccactgctatc
ggtataccaggtatgcctgctggcattgccattggtcctcgggccataagtgtagatggc
cctccgccaggctttccagccggtcggatgggcttgcctggaggaccacgatttactccc
cggtttcctcctgtatttccagggggaccacctcccagattccagggtcctatgggaact
atgctacgaccaccacgtccagatgcagacggcaggtttcctgccaacacatttactaat
aatggtacgtttgacagagctggtttcgaacgtgccatacgtccatttggtcctattggt
cctagacctgaccggccggctaatgataggtggatggggagagatagatgggcacccaga
gacactggtcctgggatgcggttccgaagggattttgaccagagggatgagttctttgac
cgatctcgctatgttcttgataacagagatcctgatcgcaatgcaggggggagacgaatg
tccaggtttgatggggaggaagatcacgaaggtgagcgtcctcctcaccattacgaggac
gatcgctctctacacgaagacgaacatgctcgtcatggcgacgacagagatcgctcaaga
cgagacgatgagagggatcggttgcgacacgtggacgaacgtgaccggctcaggcgtccc
gatgagagggagcgaacccggcacgaagacgatagaaataggttacgttacgaagttaga
gatcgatttaggtttggtgataacggaagagaaggtgcagaaggaattcgaccgaggaac
cgtgaagatcgtcccagaaagtcccgctggagcgacgttgatgataaggctgtggagact
ccttcaatggaggctccttcgttagaaactattaaggcatttgacacaattcctgaaaat
gctaatgcattgccagacactaatgctgaggagtcggttgccatggagatttctaatgct
ccgggtaatgttactccaacctgtgaggaattggaagatgctgtaaacagcagccaacca
gagaactatacagcaagcgaggacttcattcctacagaggaattctctctcacagaaaaa
taccattcggctgaagaacaaacacctgacgaccagcagccgccgccaatgtctggctca
ccccccgaagaacccccggttgacagtttcatccccactgatagctgtccccctgcagag
gattttactccgatggagtctgatgcacctgtggaaaattttgaagctccaacccctgag
aattttcttctgcagcacggggatgatgatgatgttaacgatgatgacaacaacaacaac
aattactttaatgatgatggtgttgatgacaacaacaacaacaataataacaacaacaac
aacaatgataatgatgatattaataacatcaatgatgatgataatgatattgatattagt
aataacattgctttgctgtctgaaaatgaaactcctagcttcgctgaaagctcctctcct
cctcctgtcccagaggaggaattctcttcaacagaaaattttatccccgctcacacggag
gaatttacccctatgaaaaactgctctccagaggagcctatgaacgaggcagatgagttc
cctccggcggaggacgaggtttcagaaatgattaaggcagaggaacccgaatatccgacc
ggtgaggaatcaccgttacagagtgaagaacagacaacagcttgtgatgaaaatgatgaa
taa
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