Octopus bimaculoides (California two-spot octopus): 106874107
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Entry
106874107 CDS
T04127
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03015
mRNA surveillance pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106874107
09123 Folding, sorting and degradation
03018 RNA degradation
106874107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106874107
03041 Spliceosome [BR:
obi03041
]
106874107
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106874107
mRNA cycle factors
Stress granule specific factors
106874107
Spliceosome [BR:
obi03041
]
Complex C
Other components
Complex C specific factors
106874107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_Nup35
RRM_7
RBD_DEAH11
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
106874107
NCBI-ProteinID:
XP_014777200
UniProt:
A0A0L8IDS3
LinkDB
All DBs
Position
10:45502006..45505655
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AA seq
631 aa
AA seq
DB search
MSELNLLKVSLYVGDLHPEVTESQLYDKFVKIGPIESIRVCRNVLTKKSLGYAYVNFQNY
LDAEKALDTLNFEAILGRPMRLMWSQRDPSLRRSGKGNVFIKNLDSSIDNKSLLDTFSAF
GCILSCKIISDETGSKGYGFVHFEEEKAAEEAINKVNGMLLNGKTVYVAKFIPKKDRLKE
KYKFSNVYIKNFGTDLDDEGLKNIFSKFGDIVSVKVMTDEQGQPRGFGFVSFEKADDAER
AVKELDGLELNGRTLFIGRAQKIEERKKMLKEKFDIPKTEEKFRYSGFNLYVKNLDEDFD
DERLYQEFSKYGDISSARVMMQNGRSKGFGFVCFDQQEAADKAIKEMNGRIVLQKPLFVT
FAQSKDERKKNINNLKDSVPDTHSIIPPVTASYYLPTLPSRTSYPSQMHIGNVSRWQSPL
IHQIPNQVNYNRLPTNHLKLRNSQNTRPFTGQPTGYRQNISPSFSGSGPSFMNTRPLYDN
STHARNMEALAMPHHLHNASLLHHTINPIPQQFKVPTQLTNLFQIPSVQQTKPEFTEKSL
DSLSAVSPQEQKHFLGERLFPEVKKINDIMAQKITGMLLELDSSDIIHLIESPNVLREKV
REAEMVLQQNTREKSFELDNTNLFSATMGYA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaattgaatttacttaaagtgtcactgtatgttggtgacttacatccagaggta
acagaatctcaactttatgacaagttcgtgaaaattggaccaattgaatctattcgtgtc
tgtcgaaacgtgctaactaagaagtctctcggttatgcttatgtcaactttcaaaattat
ttggacgctgaaaaagcattggatacattgaatttcgaagcaattcttggccgaccaatg
cgtttaatgtggtcacaaagagacccatcccttcgtaggtctggtaagggtaacgttttt
attaaaaatcttgactccagtatcgacaataaatctctacttgacactttttcagcattc
ggttgtattctgtcttgtaaaataatttctgatgaaactggttcaaaaggttatgggttt
gttcatttcgaagaagaaaaggcagcagaagaggccattaacaaagtcaatggcatgtta
ctcaacggaaagacagtttatgtggcaaaatttattcccaagaaagatcgtttgaaagaa
aaatacaagtttagtaatgtttatataaaaaatttcggaacagatttggacgatgaaggc
ttgaaaaatatcttctcaaagttcggcgatattgtgagcgtcaaagtaatgacagatgaa
caaggtcaacctagaggctttggatttgttagtttcgaaaaagccgacgatgctgaaagg
gctgtcaaagaattagatggtcttgagttaaatggaagaacattatttatcggtcgcgct
caaaagatagaagaacgcaaaaaaatgctaaaagagaaatttgatatccccaaaacagaa
gaaaaatttcggtattctggatttaatctttatgtgaaaaaccttgatgaggattttgat
gatgaacgattgtaccaagaatttagcaaatatggcgatattagcagtgcccgtgtaatg
atgcaaaatggtcgctcaaagggttttgggtttgtttgctttgaccaacaagaagctgca
gataaagccataaaagaaatgaatggtcgcattgtactgcagaaaccattgttcgttacc
tttgctcaaagcaaagatgaacgtaagaaaaacataaataatctgaaggattctgttcct
gatactcattcgattattccaccagttactgcaagctactatttgccgacacttcccagt
cgcacctcttacccatctcaaatgcatatcggcaacgtgtcacgttggcaatcgccattg
atacatcagattccaaaccaagtaaattacaacaggctaccaacaaatcatttgaagctg
agaaatagtcagaatactcgcccttttactggtcaaccaactggctacagacaaaatatc
tcgccgtccttcagcgggagtggtccaagctttatgaacacgcgcccattgtacgataat
agtactcatgctcgtaacatggaggcactagctatgccacaccacttgcacaatgcgtct
ttattgcatcatacgatcaatccaatccctcaacaattcaaggttcccacacagttaacc
aatctatttcaaataccgagtgtacagcaaacaaaaccggagtttactgaaaaatctctg
gatagcctttctgccgtctctcctcaggaacaaaagcatttcttgggagagcgtttgttt
cctgaagtcaagaaaataaacgatataatggcccagaaaattactggtatgcttcttgaa
ctagactcttccgatattattcacttaattgagtcccccaatgtgctgcgagaaaaagtt
cgtgaagctgaaatggtattgcaacagaatacgcgtgagaaatcgttcgagttggacaac
accaatttattctcagctaccatgggctatgcttga
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