Octopus bimaculoides (California two-spot octopus): 106875080
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Entry
106875080 CDS
T04127
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obi03041
]
106875080
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106875080
Spliceosome [BR:
obi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106875080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
Ank_2
nSTAND3
AAA_19
Ank
Ank_5
T2SSE
Ank_4
Sigma54_activat
AAA_22
ANK_LRRK2
ResIII
AAA_16
ATPase
NACHT
RED_N
AAA_29
TsaE
ATPase_2
AAA_7
SRP54
PhoH
AAA_30
Motif
Other DBs
NCBI-GeneID:
106875080
NCBI-ProteinID:
XP_052829379
LinkDB
All DBs
Position
15:complement(47633965..47677567)
Genome browser
AA seq
1448 aa
AA seq
DB search
MQRYPLTNKERQDLFPKPEKSLGDGRDIMKTSVGRLSNGVPQVPPKSGESTVSGLRETLP
IYQHADEILQALDSHQVVLVTGETGSGKTTQVPQIILNDHHNKGKLCRIFCAQPRRIAAL
SIAERVSAERGEKIGQIVGYQIRLESKVSPRTLLIFCTTGVLLRTLMGSDAALNTVTHII
VDEIHERDRYSDFLLITLRDVLPRFKNLKLVLMSAALNTELFINYFSNCAFVSIPGTLFE
VKEYFLEDVLKWTNYSTKAMERSKRELSNVEKQQKQLSDWCSRKLSLTNESEDKPYRTKM
AGKNLEVLDKALEKSVEEKDELEPWLIKEMDQLLTDAWLTDSEEAFEQIFNLIINESISV
DYKHSETSATALMIATGRGYFDVVERLLSLGASVNVQASNDWTVFEWAKKFQRAEILELL
ESYRNSPEDNVTSDTVLVKSSENMTPQDRELLNIYHQCFDDDKIDKDLIMYLIHKICTTS
SEGKLYILFMLHSSMQSLDQKRVFKPSPPGVRKIILSTNIAETSLTINDVIYVIDSGKMK
EKSFDAFCSVTMLKTHWVSKANALQRKGRAGRVQPGVCYHLFSRIRHDNLEQYQVPELLR
LPLHELCLQTKMIAPSSTSIADFLSNAIQAPSFLIIRNALQLLKQIDALDPWEDLTELGH
HLADFPIAPSLGKMVLYSVVLKCLDPVLTIVCSLANKDPFLIPGQPSQRRAANLVRKKLS
ANTYSEHMILLRAFQVSNSVIQAQLLGQLRASGFVRARGGGDIRDLNINSEKWCVVKAAL
CAGLYPNVLRIDRVTGQLLSAKEMKIRLHNLSVFSPNLSASQRNTDLSSFPSDWIIYEEM
SRNSSLAFVRCCTVISPITVALFAGPAKLSPEVIKEAESGQIDDRKCHDFTRPHDLDNVS
DSGEEENEELKKSSLRLDEWLSFQVDSESSSLVLQLRQKWYSLFIRRMRAPSKPWTQTDE
AIVRAIVEVLVTEERELGLQQPAGIGQRPISMAAESILSSVGNQSCIDSEDQNEDRSRMA
KRSSAISTSSKKKDSTSNNQRNLDTSFSKSIWTTSPNNEKKLNKAFQDGKTVYLIFSIQG
SGCFQGYAKMLSTFSKDRSAEYSMPGLGATCTVDWLKRGNIPFHNVQHLSNPWNDNKRIQ
VSRDCQEIEPFVGETLLKQWDKLGPHYNQKRPITKSSLENSSHHTSNKPLYTQANNLPNT
ALTLSAGLNGCPEPGAYNLTGGDIFSNPFQGGPMNAKGLVAGSKQSNNINQYLGPHNFGM
SGNGNMLKGGGGGGKSASSSSASHHYSNKHGNGNYGNTSGSSIGNSSHHHSNHQNNNNSN
NNNKYLYRGGGGNMANSASHPCHSSGHLLGIYQGHRHQNMIGGNAAGQETKYGNTLLSVV
YHTFILKVLLSVTQGQDAEYGSTPVYVIHQSFILKALLSMKQRQDAEYGNTPLKCHIPYI
HSESTPPN
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagatatccccttacaaacaaagaacggcaagatttatttcccaagcctgagaaa
tccttgggtgatggcagagacatcatgaaaacttcagttggtcgcctcagtaacggcgtg
ccacaggttcctcctaaaagtggagaatctacagtgtcaggacttcgcgagacgttaccc
atctaccaacatgctgatgaaattctacaagcactggacagccaccaggttgtgttagta
acgggtgaaactggttctggaaaaaccacccaggtgccacaaataattctgaatgaccac
cacaataaagggaagctgtgtagaatattctgtgcccaaccacgcagaattgctgcctta
tctattgccgagagagtttctgctgaacgaggagaaaagattggccagattgtcggctac
cagatacgtcttgaaagcaaggtgtcgccacgaactttgttgattttctgcaccactgga
gtattactgaggacacttatggggagtgatgctgctttgaacactgttacacacatcatt
gtcgatgaaattcacgaaagagacagatacagtgatttcctgctcataaccttacgagat
gtacttccacgtttcaagaatctgaagttggttttaatgagtgcagcattaaatactgaa
ctgtttattaattatttcagcaactgtgctttcgtaagcattccaggaacattatttgag
gtgaaagaatattttttagaagatgtattgaaatggaccaactattccaccaaagccatg
gaaagatctaaaagagaattatcaaatgtggagaaacaacagaagcaattaagtgactgg
tgtagcagaaaattaagcctgactaacgaatccgaagacaagccttaccgaactaaaatg
gctggtaaaaacttggaagtgttagataaagccctagagaagtctgtagaggagaaagac
gaacttgaaccctggttgattaaagaaatggatcaacttctcacggatgcttggctcact
gacagtgaagaagcttttgagcagattttcaatttaattattaacgagagcatcagtgtc
gactacaagcattctgaaaccagtgcgacagcgttaatgatagccaccggtcgaggctac
tttgatgtagtcgaaaggttgttgagtctgggagcaagcgtcaatgtccaggcatccaat
gattggactgtctttgaatgggctaagaaattccaaagagctgagattctggagcttctg
gaaagttatcggaattctccagaggacaatgtcacatcggacacagttctagtgaagtca
tctgaaaatatgacaccccaagacagagaacttttgaacatctaccaccagtgttttgat
gatgacaaaattgacaaagacctcatcatgtatcttatccataagatatgtactacttct
tctgaaggtaagttatatattctctttatgctacactcctctatgcagtcactggatcag
aaacgagtttttaaaccatctcctccaggagtgaggaaaattattctctcaacaaacatt
gctgaaacaagtctcaccattaacgatgttatctacgtaattgactcagggaaaatgaaa
gagaaatcctttgatgcattttgttctgtgaccatgttaaaaactcattgggtttccaaa
gcaaatgctttacagagaaagggccgtgccggacgagttcaaccaggtgtttgctatcac
ttgttcagcagaatacgtcacgacaacctggagcaataccaagtcccagaactgttacgg
ttacccctacatgaactctgtttgcaaaccaaaatgattgccccttcaagcacatccatt
gctgactttctctccaatgctatccaagctcccagtttccttatcatccgcaatgctctc
cagctgttgaagcaaatcgatgccttagatccttgggaagatctaactgaattgggccat
catttggcagacttccccattgctccgtctcttggtaaaatggtactttattctgtggtc
ttgaaatgtctggatccagtcttgaccattgtttgttcccttgccaacaaagatcctttt
ttaattcctggtcaaccctctcaaagaagagctgccaatttagttaggaagaaactgtct
gccaacacatacagtgagcatatgattctgctcagagcctttcaggtgagtaacagtgtt
attcaagcccagcttcttggacaattgcgtgcttcagggtttgtgagagcacgaggcgga
ggtgacataagagacttgaatataaattccgagaaatggtgtgttgtgaaagctgccctc
tgtgcaggtttatatccgaatgtacttcggattgatcgtgttacaggacagttattatca
gcaaaagagatgaaaatacggttgcacaatttgtccgtgttcagtcccaatctgtcagcg
agccagcgtaacactgacctctcttcgttcccttcagactggattatctacgaggagatg
tcccgtaacagtagtttggcctttgtacgctgttgtacagtcatctcacccatcaccgtc
gccttatttgcagggcctgccaagttgtccccagaggtcattaaagaagcagaaagtgga
cagattgatgatagaaaatgccatgatttcaccaggccccatgatcttgataatgtcagt
gacagtggagaggaggagaatgaggaactgaagaaatcttcgcttcgtctcgatgaatgg
ttatctttccaagttgattctgagagttcttccttagttcttcagttgagacagaagtgg
tacagtttgtttatcagacgaatgcgagccccgtcaaaaccttggactcaaaccgatgag
gctattgtgcgagctattgtcgaagtgttggtaacagaagagagagaacttggcttgcaa
cagcctgcaggtattggacagagacccatttcaatggctgcagaatcaattctctctagt
gttggtaaccaaagttgtattgattctgaagaccagaatgaagaccgatcgcggatggca
aagcgaagttcagcaataagtacctcttccaaaaagaaagattccacaagcaacaaccag
cgcaacttggacacctcattcagcaagtccatctggactacgtcaccgaataatgagaag
aaactcaacaaggctttccaggatggcaaaacggtctacttgatattctcaatccaagga
agtggctgtttccaaggttatgctaaaatgttatctacatttagcaaagatcgaagtgca
gagtattctatgccaggtctaggtgctacttgcacagttgactggttgaaaaggggaaac
attcccttccacaatgtccagcatctttcaaacccttggaacgacaacaagaggatacaa
gtgagccgtgattgtcaggaaatcgagccatttgttggtgagactctactaaaacagtgg
gataaattaggtcctcactacaaccagaagcggccaataacgaagagcagtttggagaac
agcagccaccacactagcaacaaaccactgtatacgcaggcaaacaacttgccgaatact
gctctgacactctccgctggcctcaatggttgccctgagcctggagcttataatctcact
ggtggagacatcttctcaaaccctttccaaggtgggccgatgaacgcgaagggcttggtt
gccggctcgaaacagagcaacaacatcaaccagtacctcggcccgcacaactttggcatg
tctggtaatggaaacatgctgaaaggtggtggtggtggtggcaaaagtgcttcttcttct
tctgctagtcatcactatagcaacaaacacggaaatggtaactacggcaacaccagcggc
agcagcatcggcaacagcagccaccatcacagcaatcaccaaaacaacaacaacagcaac
aacaacaataaatatctgtatcgaggtggtggaggcaacatggcgaactctgcgtcccat
ccgtgccactctagtggccacctcctcggcatctaccagggccaccgccaccagaacatg
atcggcggcaatgcagcaggacaagaaacaaaatatggaaatactcttctcagtgtcgta
taccatacgttcattctgaaagtactcctgtccgtgacacagggacaagatgctgaatat
ggaagtactcctgtctatgtcatacaccagtcattcattctgaaagcactcctttccatg
aaacagagacaagatgctgaatatggaaatactcctctcaaatgtcatataccatacatt
cattctgaaagtactcctccaaattaa
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integrated database retrieval system
