Octopus bimaculoides (California two-spot octopus): 106875137
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Entry
106875137 CDS
T04127
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106875137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obi03021
]
106875137
03019 Messenger RNA biogenesis [BR:
obi03019
]
106875137
Transcription machinery [BR:
obi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106875137
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106875137
U7-dependent histone pre-mRNA processing factors
106875137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_GCN1_C
DUF2232
DUF6267
Motif
Other DBs
NCBI-GeneID:
106875137
NCBI-ProteinID:
XP_052824379
LinkDB
All DBs
Position
6:21556497..21598418
Genome browser
AA seq
1341 aa
AA seq
DB search
MVEQTGETTGVTDSAAAPPSISRCNGAYPIVDDAIEILPIDIVFTLFVILLYIFMNITMA
GDNRRSTAAQFFSEEEDAGTEQMSTYNRVVDLLNQASFMQKNNMKTENLRQVQELILYKE
PNLLDNFLEEMLAFQSDRSVEVRKFVISFIEDACKKEPDLLQKILPNLGALFQDENVNVQ
KRVILAMAGLHRLALQWLSQSKTITEEMQQTWKQILQLKTYIIEMMESLNDGIRTHVVKF
IENVVLTLTKKSPESDIPKKLENEMTLDKVPENHKLLDVNKLEEEGNELFVSLLKFQASP
HISSINLMTVMGSLTAIAKQRPVYFDQVVQAFESLHVNLPPTLAKSQVSSVRKNLKMQML
ALLKHPYSPRFMSQITTLLTDLGAMQSEVRVSDIQTFQYLSVLYPTFLVCVSALSASFTI
IYMRRLVTECHKCHPGHFRGYTSSSKKSKVEIKPDPDVEEEEIGAAPSKEKIPSTAQKQT
AIDITAEDLVGRLNPHNVADLVLISMVMLPDTLPAHFQATYTPIAAAGTPGQIKHLARLL
ATQLTMAGMGKGISDVQRMNVESEETPATTEEEKVTPKLQIQTVVGGTIQVGADEPKKPD
TALITQPLMGTRKGLKQFKLSSVTKPMNRDLLDQMTVRAVRRILMAEKSALIGNALPERT
KILASLVAQFGGELKNLLQEYIFEDLRNRADIAFSWLYQEYVVCHGFNRSNMGEHKTVLA
SYDECLTRLLNGLLERSDHRDGLFTRLFLEAPIITDNAVQILRKFCQDENRVHIGMETLQ
EMILARPHHRPKYLILLLDFASHDKVEVRNHAIHVIKKLYERDDIHKLIEAHALTYLRYL
LSPKPPPELFSTTKLKSDPPETWVEDCIKLCLYLYLGLLPSNHKLIHELATVYTATSADI
KRTILRVLENPVRGMGMDSPELLLLVENCPKGAETLVTRVIHILTDKSVPSPELVERVRD
LYHKRVPDVRFLIPVLTGLRKKEVLAALPKLIRLNPIVVKEVFNRLLGHANADASYTSPL
TPAELLIALHNIDPTKCDMKTIIKATNLCFSEKNVYTQEVLAVVMQQLMELNPLPTLLMR
TVLQSLSMYPRLIGFVMNILQRLITKQVWKQKRVWEGFIRCCQRTKTQSFQVLLQLPAPQ
LRNVFEISPDLREPLFHHVQSFTPHQRAHIPKVIMNVLEKDPLEQVKAAEKLEKEKRENS
VVIKVPTVEGTDTATPNQPTESTAPESQPKATEEKPNDEESQNLPLPLAVVSVPLLTQPS
SVPSQQFPKTQTTSEVPQEIETLSTPAVVHEKEVEDDDKDHTAQPGAKNNTVPSVPSSHR
SNSPSPSQHPTLLTLTEGGTD
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggttgaacaaacaggggagactactggtgtcactgactcggctgcggcgccaccgtca
atcagtcggtgtaatggcgcctatccaattgtagacgatgccatagaaattttgccgatt
gacatagtttttaccttgtttgttattctgttatatatttttatgaatattaccatggca
ggagataataggcgatcaactgccgcgcaatttttttcggaagaagaagatgccggtact
gagcagatgtcaacatataaccgggtggttgatttgcttaatcaagcatcatttatgcag
aaaaacaatatgaaaacagaaaatctacgacaggttcaagaactgatactttataaagag
cctaatcttttggataattttttagaggaaatgttggcctttcaaagtgaccgctctgtt
gaagttcgaaagtttgtcatcagtttcatagaagatgcatgcaagaaagaacctgatctc
ttacagaaaatcctgccaaaccttggtgctcttttccaagatgaaaatgtcaatgttcag
aagagagttattctggcaatggctggacttcatagactagcgttacagtggttgagccag
agcaagacaattactgaagaaatgcaacagacttggaaacaaatcctacaattaaaaacc
tacataattgagatgatggaatctttaaatgacggtatccgaactcatgttgtgaaattt
attgaaaacgttgttctaactttgacaaagaaatctcctgagtcagacattcctaagaaa
cttgaaaatgagatgacacttgataaagtccctgaaaaccataaactgttggatgttaac
aaattagaggaagagggcaatgagttatttgtctctttgctgaaatttcaagcctcacct
catatatccagtataaatctgatgactgtcatgggaagccttacagcaattgctaaacaa
agacctgtatattttgatcaagtagtacaagcgtttgaatccttacatgtaaatttacca
ccaacattagccaagtcacaagtaagcagtgttcgtaaaaatttaaagatgcagatgttg
gctttactaaagcatccatattctccacgcttcatgtctcaaataactactctcttaacc
gatcttggagcaatgcagtcagaagtaagagtttcagatattcagacatttcaataccta
tccgttctctatcctacctttttagtctgtgtgtctgctctcagtgcatcctttacaatt
atttatatgaggcgtttagtaacagagtgtcataagtgccaccctggccattttcgaggt
tatacttcatcgtctaaaaagtccaaagttgagataaagcctgatcctgacgtggaagag
gaagagattggagcagcaccaagtaaagaaaaaattcccagcactgctcagaaacaaaca
gctattgacatcactgctgaagatttggttggtaggctaaatccacacaatgtagcagat
cttgtattgattagtatggtaatgttacctgatacattaccagcccacttccaagcaaca
tatacaccaattgctgcagctggtactcctggtcagattaaacatcttgccaggttactt
gcaacccagcttactatggctggaatgggtaaaggtatctctgacgtccaacgaatgaat
gtagaaagtgaagaaacacctgccacaacagaagaagaaaaagttactccgaaattacaa
attcaaactgtagtaggaggaactatacaagtaggagctgatgaacctaaaaaacctgat
actgctcttataacacaaccattaatgggcactcgtaaaggattaaagcagttcaagttg
tcgagtgtcacaaaaccaatgaacagagatctcctggatcaaatgactgtcagggctgtg
aggcgtatattaatggctgaaaaaagcgctcttattggtaatgcattaccagaacgaacc
aaaattttggcctcccttgttgctcagtttggtggtgagctgaaaaatttattacaagaa
tacatatttgaagacttacgtaatcgagcagatatagctttctcttggttatatcaagaa
tatgttgtctgccatggtttcaaccggtccaatatgggagaacacaagacagttctggca
agctatgatgaatgtttgactcgattgcttaatggcttattggagagatctgatcataga
gatggactgtttacaagattgtttctggaagctcctattatcacagacaatgctgttcag
atacttcgtaaattttgtcaagatgaaaatcgtgttcatattggaatggaaactctgcag
gaaatgatcttggcacgaccccatcatcgtccaaaatacttgattttattattagacttt
gcatcgcatgataaagtggaggtgcgaaaccatgcaatccatgtcatcaagaagctatat
gaacgagatgatatccacaaactaattgaggctcatgcattaacttaccttcgatatctg
ctcagccccaaaccaccaccagaattgttttcaacaacaaaattaaaaagtgatcctccg
gaaacctgggtagaagattgcattaaactctgcttgtatttatatcttggtctgttaccc
agtaatcacaaactaattcatgagctagccactgtatatacagcgacttcagcagatatc
aaaagaactatcctcagggttttggaaaatccagttcgtggaatgggcatggactctcct
gaactgttgcttttagttgaaaattgtccaaaaggagcagagacccttgttacaagagta
atccatatcctcactgataaaagtgttccttctcctgagctggttgaacgagtccgagat
ctttatcataaaagagttccagatgttcgtttcttaatacctgtgctcactggattacga
aagaaagaggttttggctgctttacccaaactgattagattaaatccaattgttgtaaag
gaagtttttaacagattacttggccatgccaatgctgatgcttcttacacctcaccgttg
actccagctgagcttttgatagctttacataacattgatcctacaaaatgcgatatgaag
accatcatcaaagctaccaatttatgttttagtgagaaaaatgtttacacccaggaggtt
ttggctgtagtaatgcagcagttgatggaattgaaccctcttcccactcttctgatgaga
acagttctgcagtctttatccatgtatccacgtctcattggatttgtgatgaacatttta
caaagacttatcaccaaacaggtgtggaagcaaaaaagagtttgggaaggttttattcga
tgttgtcaaagaactaagacacaatcatttcaagtacttctgcaacttccagcaccacaa
cttcgtaatgtctttgaaattagcccagacttgcgtgaaccacttttccaccatgttcag
tcttttactccacatcagagggctcatatacctaaagtgattatgaatgtgttggagaaa
gacccacttgaacaggtgaaggctgctgaaaagctagagaaagagaaaagagaaaattct
gttgtgataaaagtgccaacagttgaaggtacagacactgccacaccaaatcaaccaact
gagtccacagctcctgaaagtcaacctaaagccaccgaagagaaacctaatgatgaggaa
tcacagaatctacctttgccattagctgtagtttctgttcctctgcttactcagcccagt
agtgttccatcacaacagtttccaaagacccaaacaacttcggaagttcctcaagaaatt
gaaacactttcaactcctgctgtggttcatgaaaaagaagttgaagacgatgacaaagat
catacagctcagcccggtgccaaaaacaacacagtgccatcggtgccatcatcacatcgc
agtaattcaccatctccatctcaacatccaactttgttgactttaacagaaggcggtacc
gactag
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integrated database retrieval system
