Octopus bimaculoides (California two-spot octopus): 106875374
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Entry
106875374 CDS
T04127
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106875374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106875374
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
106875374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
106875374
NCBI-ProteinID:
XP_052828003
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Position
12:complement(49096535..49125563)
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AA seq
707 aa
AA seq
DB search
MAENTNGTKTEMTTETSNEVEDIGIYTQKVLQTVLQCVKSSNALPAEGDDYDFYSSFPGF
QEIMEIEGKRILHIIQNIMKHQLVKGNIAAESQSSTEIEDRFEHIIDANDQLLEKIGNLL
DEASGIKKQENTLVITNFKPKQTNIASWNKKSPATTPAAPNNYRLITGRQLVRPQTKFTD
DIDNSNNSFVPRIRRKPNALKSLEESLKVDVNAENISDPDFFYPHPYAYEMDHWKAMDHQ
LEKSEAKFPKPIKETSLGYIDTVGKLEDLCRDLAKEEVIAVDLEHHSYRTFQGLTCLMQI
STFDQDFIIDTLELRKELELLNDVFTDPKIVKVFHGANCDVGWLQRDFGIYVVNMFDTGQ
ASRILNYERFSLSYLMERYCQKEIDKQYRLADWRIRPLPDVLINYAREDTHYLLYIYNCM
KNELIEKGNLNKNLLKAVLQRSTEICKKVYTKPIYNDESHQVLYRKSRKTFNSQQMFALK
KMYSWREKTARNQDESLNYVLPNHMLLQIAEILPRERQGVLACCNPIPPLIRQYLQEIHG
YILEARDITIVKQRGVVPEKKDSVSIDPKYDMNKLLEYPHDLSHQINNKDNESDNFEDTL
MANKLNGAELSDNSIMNLKEHPLLSAFDWFSVKNSQNKNFAADLKESFKSPFTMFFPVNQ
SEEENSKSTDVEIEKHWKLLKKQKPKKKVSQICSESTSFSIPYKFTS
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaatactaatggaacgaaaaccgaaatgacgacagaaacgtcaaatgaagtg
gaagacatcgggatatacacgcagaaagttctccagactgttctccagtgcgtgaaatca
tcaaatgcattgcctgccgagggagatgactatgacttctattcgagttttcctggtttc
caagaaatcatggaaattgaaggcaaacgtatactacatatcattcaaaacattatgaaa
caccaacttgtgaagggaaacatagcggcagaaagtcagagctcgacagagatagaagat
agatttgagcacatcattgatgccaacgaccagctgctggagaaaattggaaatttattg
gatgaagcttcaggcattaaaaaacaagaaaatacacttgttatcaccaacttcaaacca
aagcagaccaatattgcaagctggaataaaaagtctccagccactacgcctgcagctcct
aacaactacagattgattacaggacgtcaacttgtgagaccacagactaaatttacagat
gacattgataattccaacaattcatttgttccacgaatccgaagaaagcccaatgctctg
aaatcactcgaagaaagcttaaaggttgatgttaatgctgaaaatatatcagaccctgat
tttttctacccacatccgtacgcttatgaaatggatcattggaaagcaatggaccatcag
ttagagaaatccgaggcaaagtttccaaaaccaattaaagagacttctcttggatatata
gatactgtggggaaattagaagatctctgtagagatttagccaaagaagaggtcattgca
gttgatttggagcatcattcctaccgaacgttccaaggtctaacatgtttgatgcagatt
tctacatttgatcaggacttcattatagacacactagagctacggaaagagctagagtta
ctcaacgacgtcttcacagatcctaaaattgtcaaagtgtttcatggtgccaactgcgat
gtgggctggttacagagagactttggtatttatgtagtgaatatgtttgatactgggcaa
gcgtctcgaatactaaactatgaacgcttctcgctgtcttatttaatggagaggtattgt
caaaaagaaattgataaacaatatcgattagctgactggagaatccggcctcttcctgat
gttttaattaactatgcccgtgaagacacacattatttactgtatatttataattgtatg
aagaatgagctcattgagaaaggtaacctgaataagaacttactaaaggctgttttacag
aggagtacagagatatgtaaaaaggtttacacgaagccaatttataatgatgaatcacat
caagtgttgtacagaaaaagtcgtaaaaccttcaactctcaacagatgtttgccttgaag
aagatgtattcttggagagagaagacagcacgaaatcaagatgaaagcttgaattatgtt
ctccctaatcatatgctgctacaaattgcagagattctaccaagggaacgacaaggtgtc
ttagcttgttgcaacccaataccacctctgattcgtcagtatttacaagaaattcacgga
tatattctagaagcaagagatattactatcgtgaagcaacgtggcgttgttcctgagaag
aaagactctgtttccatcgacccaaagtacgatatgaacaaacttttagaatatcctcat
gatttatctcatcaaatcaataacaaagataatgaatcagacaatttcgaagatactctg
atggccaacaaattaaatggtgctgaactttctgataattctatcatgaatcttaaagaa
catcccttactttcggcatttgactggttctcagtgaaaaattctcagaataaaaatttt
gctgcagatcttaaggaatcttttaagagcccttttactatgttctttcctgttaatcaa
agtgaggaagaaaatagcaaatctacagatgttgaaattgagaaacactggaaactttta
aagaaacaaaaaccgaagaaaaaggtttcacagatttgttcagaatcaacatcattctcc
attccttacaaatttactagttga
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