Octopus bimaculoides (California two-spot octopus): 106875707
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Entry
106875707 CDS
T04127
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
obi03009
]
106875707
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106875707
Ribosome biogenesis [BR:
obi03009
]
Eukaryotic type
Pre-60S particles
Helicases
106875707
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
106875707
NCBI-ProteinID:
XP_014779438
EnsemblRapid:
LOC106875707
LinkDB
All DBs
Position
6:complement(20465026..20490496)
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AA seq
611 aa
AA seq
DB search
MDDTWDKLSLSEASCAALKDLKFVKMTPVQSACIPLFLQNKDVATEAVTGSGKTLAFVIP
IIERLQKHEQPWKKHEIAAIILTPTRELAIQIEEVLLVFLKHLPQFTSCCMIGGTSVQLD
IEKFQEHGGHIIVATPGRLEDILDRQAKVLNFASFVKSLEVFVMDEADRLLESGFEASVN
TILSYLPKQRRTGLFSATQTDEVEKLIRAGMRNPVRISVKEKQTSAHMIQRIPSTLSIFY
MICEGDEKFNQLVHFLREHKNDKVMVFFSTCAAVDYFCGALKLILKKHSILGIHGKMRKK
RNNIFARFRKQQSGILMCTDVMARGVDVPEVHWVFQYDPPSSASAFVHRSGRTARIGNTG
NSLVLLTPSEDAFIEFIARNQKVPMRQFSKSDNVLPAVDKLKRLSEKDRSLYDKSVRAYV
SFIQSYAKHECSMIFRTKDLDFGRLATGFGLLKIPVMPELKGKKIDNFTPSSVDINTIPY
LRHLPKVSLSTTELKSMWLGSELTHTAIPAPINALVMNLNENVVHPNIGTIAWSKKKEKK
EIKKKRQETNKLKKKNKKMKMTESVQKSKLEAAEKSRLEEIKDLQDDYRLLKKQKKGKIS
EEDFEKQFTES
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggacgacacgtgggataaattgtccctttcagaggcttcttgcgccgctcttaaggac
ttaaaatttgttaaaatgacgccagtgcagtctgcatgtattccattatttctccaaaac
aaagatgtagcaactgaggcagtgacagggagtggcaaaactctggcatttgttataccc
atcattgaacgactacagaaacatgaacaaccctggaagaaacatgagattgctgcaata
attttgacccctaccagagaactggccatccaaattgaggaggtcctattagtattcctc
aaacatttacctcagtttacctcctgttgtatgattggaggtaccagtgttcaattggat
atcgaaaaatttcaggaacatggaggtcatattatagttgcaacccctggtcgcttggaa
gatatactggatcggcaagcaaaagttttgaactttgcatcttttgtcaagtcattggaa
gtctttgtcatggatgaagctgatcggttattagaaagtggatttgaagcgagtgtgaat
acaatcttaagctatttaccaaagcagcgtcggacaggtcttttctctgcgactcagaca
gacgaagtagagaagctgatccgggctggcatgagaaatccagtgagaatatcagtgaaa
gagaaacaaacctcagcccacatgattcagaggattccaagcaccctgtccatattctac
atgatctgtgagggtgatgagaagttcaaccagttggtgcatttccttagagaacacaaa
aatgacaaagtgatggttttcttcagcacttgtgctgctgtcgactatttttgtggtgca
ctaaaattgattttgaaaaaacactcgattttaggcatccatggcaaaatgaggaagaaa
aggaacaatatttttgccagattccggaaacagcaaagtggaatcctgatgtgtactgat
gtaatggctcgtggagttgatgttcctgaagttcactgggtttttcaatatgatccacca
agttcagccagtgcttttgtccatcgcagtggaagaactgctcgtattggtaacacagga
aatagtctggtgctgttgaccccaagtgaagatgctttcatagaatttatagccaggaat
caaaaggtgccaatgcgacaattttcaaaatctgataatgtccttccagccgtcgataaa
cttaaaagactttctgagaaggacagatccctttatgacaagagtgtgagagcttacgtt
tcctttatccagtcttatgccaaacatgaatgtagcatgatcttccggactaaagatctt
gattttggtcgattggcaacaggctttggcctcctcaaaattccagttatgcctgaactg
aaaggaaagaaaattgacaacttcacaccgtcatctgtcgatataaacacaattccatat
ttaagacacttgcccaaagtgtcactcagtacgacggaactcaaatccatgtggttggga
agtgaactgacccacactgccataccagcacctattaatgcactggtgatgaatttaaat
gaaaatgttgttcacccaaacatcggtacaattgcctggtcaaagaagaaagagaagaag
gaaataaagaaaaaacggcaagagacgaataagctaaagaagaagaacaagaagatgaag
atgacagagagtgtgcagaagagtaagcttgaagcagcagagaagtcaagattagaagaa
ataaaagaccttcaggatgactatcggttattaaagaaacagaagaaaggcaaaatttct
gaagaagactttgagaaacagtttacagaatcctga
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