Octopus bimaculoides (California two-spot octopus): 106875921
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Entry
106875921 CDS
T04127
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03022
Basal transcription factors
obi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106875921
09124 Replication and repair
03420 Nucleotide excision repair
106875921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obi03021
]
106875921
03400 DNA repair and recombination proteins [BR:
obi03400
]
106875921
Transcription machinery [BR:
obi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
106875921
DNA repair and recombination proteins [BR:
obi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
106875921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
C1_2
Castor1_N
Motif
Other DBs
NCBI-GeneID:
106875921
NCBI-ProteinID:
XP_014779722
UniProt:
A0A0L8GMG6
LinkDB
All DBs
Position
3:101548093..101576709
Genome browser
AA seq
403 aa
AA seq
DB search
MADDDENLYRWETAYERTWEAIKEDEAGSLQASVNEITQKTKRRRLLERISNVRLGMMRH
LFLIIDMSEAMVDPDLKPNRLAATVKLAENFIEEYFDQNPISQLGIIVTRKKRAEKVTEL
GGNPRRHVAALVAVSKNPCQGEPSLQNSIEMAAQTLKQMPSHASREILIIFGSLTTCDPG
DILNTIKTVKESSIRCSVIGLSAEVRVCRRLTAETKGDYRIILDESHFKDLLNGHVIPPP
ASGNTESSLIRMGFPHHQQSMDKDKEDRPSMCMCHLDDKTSQNFSSGGYFCPQCRSKYCE
LPVECKACALTLVSAPHLARSYHHLFPLANFKEVVATEAVSDKPQFCYGCQISLKEKNIY
ICTKCDQNFCIDCDLFAHETLHCCPGCSSSRSTQQIGLMESFT
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgacgacgagaacctttaccgttgggaaacggcatatgaacgtacatgggag
gctataaaagaagatgaagcaggttcattacaagctagtgttaatgagattactcagaaa
acgaagcgtcggcgcttattggagcgtattagtaatgttcgtcttggtatgatgcgtcat
ttgtttctgattattgatatgtctgaagccatggtggatcctgatttaaaacccaacaga
ttagcagctactgtcaaacttgctgaaaatttcattgaagaatactttgatcaaaaccct
attagtcagcttggtattattgtaacacgaaagaaaagagctgaaaaagttactgaactt
ggtggtaacccaagacgtcatgttgcagcactggttgctgttagtaaaaatccatgtcaa
ggagaaccttctctacagaactcgattgaaatggcagcacaaacactaaaacagatgcct
agtcatgccagtagagaaattcttattatttttggtagtttaaccacatgtgatcctgga
gacattcttaatacaataaaaacagttaaagaaagttctatcaggtgttctgtgattgga
ttatcagctgaagtgagagtttgcagaaggcttactgcagaaacaaaaggagactatcga
attatcctggatgaatctcattttaaggacttattaaatggacatgttatacctcctcct
gcatcaggaaacactgaatcctctctcatcagaatgggtttcccacatcatcaacagtct
atggacaaagataaagaagacagaccgtcaatgtgtatgtgccaccttgatgataaaaca
tctcaaaacttcagtagtggtggttatttttgtccacagtgcagaagtaaatattgtgaa
cttcctgttgaatgcaaagcttgtgctttaactttagtgtcagcccctcatttggctcgt
tcataccatcacttatttccacttgctaattttaaggaagtagtagcaacagaagctgtc
agtgataaacctcaattttgctatggttgtcagatttctttgaaagaaaaaaatatatat
atttgtaccaaatgtgaccagaacttttgtatagattgtgacttgtttgctcatgaaacc
ttacactgttgtcctggctgttcctcatcacgttcaacccaacagataggattaatggaa
tctttcacataa
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