Octopus bimaculoides (California two-spot octopus): 106875945
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Entry
106875945 CDS
T04127
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
obi04147
]
106875945
00535 Proteoglycans [BR:
obi00535
]
106875945
00536 Glycosaminoglycan binding proteins [BR:
obi00536
]
106875945
Exosome [BR:
obi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106875945
Proteoglycans [BR:
obi00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
106875945
Glycosaminoglycan binding proteins [BR:
obi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106875945
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Laminin_G_3
Collagen_trimer
Laminin_G_2
Glyco_hydro_59_C
Motif
Other DBs
NCBI-GeneID:
106875945
NCBI-ProteinID:
XP_014779756
LinkDB
All DBs
Position
2:complement(130268070..130554613)
Genome browser
AA seq
1267 aa
AA seq
DB search
MVLRKYCLVVTIWLIGVLSRYDVRGQEAVEEGLLPLNSEHVDMLGVIGIPSDPVRFSTGM
DYFPAFRLLGKKEFKDNANQLFGNKAINDFALTMVVHIEKPDTSFIFAVLDPTASIIQLG
VSVSSNSQGNEQNISLYYSPTTADVNTSVSSKILASFKLENLLNNWARISFMVKDDIVEI
YLNGTKKGRHQVIREPLVLEDASSIYIGGGGPAQRKMFVGSLQELKLYSNPDVATYYEEA
ITPLLRLSPRQRSATLQAGHSESQSSKIIHLRTSELWSDYGSGSGSGRDEIIVPTKYPYR
PHVSHTIKGEKGSQGEKGIKGEPGISQPMISPPPPLPPRSGLKGDQGPPGLMGPIGVPGQ
KGEKGEIVKLDLSGQGGIGAKGEKGERGMTGFAGVKGETGKSIVGPPGKPGSPGSTGLQG
PPGPPGPPGQSYGEPSSGYSGTFIDLESSGDDQIAKGKGIVGPRGPPGHTGPPGLPGLKG
LPGDKGERGENGLNGIDGEIGRDGAKGEPGVRGHSGEPGPVGQKGEPGQNGYDGRDGLPG
PPGPPGVIVGSIDDELSGHSNFDGSSTGSIAVKGEKGDRGYPGQNGQRGHPGANGIVGQK
GERGYKGEHGQKGVSGLPGEQGLRGRPGLVGGPGEKGERGKPGMKGPRGIGRVGPAGRPG
PPGPPGIPPEIKTSDDTVIINGRKGEPGSTGPVGPQGIAGPPGPPGPPGVPGFSTADSNG
KGLKGEPGGCRSCVGLKGERGPVGPKGSMGYTGKKGVKGGKGNMGMPGFTGRQGLRGRKG
EPGYGLKGRAGERGLPGPPGIPGISEPWKSDGSNGFNSKGNKGERGYTGRSGPPGPPGPP
GPLSSPSSGVIINTGSGDTERIYRGEKGEKGDKGDKSEASIFDKRYYKGNAGLPGPPGPP
GPPGPPNTGSYAGSNGHGDAYRLYRQKGQKGEMGEKGSTGRGIPGIPGVSIPGRPGPRGP
PGPPGPQQHSYGGSSTINDQTYSASHAIATYRNMGELQDVALTIPVGSIAFVHDKELLLI
RLKDAWAEIQSRRIALPRYLDRIPLPVPKPSEIKSGRKTRMETTTVLTSTPKPPEIHVLP
PNLDKEKYQRNRKVLKLIALNKPLTGKMNGVNTIDLFCHQQARRASFKATFRGFLSNQIQ
DLKTLIYDKKERNYPIVNSKGEILVDSWEHLITGDGGYFNSSVPLYSFDGTNVMTSSRWP
QKFVWHGSSTKGERKRDRFCSNWRSSGRNNVGVASSLMAHQFLGYEEFHCNNNFIVLCIQ
IATMKHY
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggtactaaggaaatactgtttagtcgttacgatatggctgatcggagtacttagccgg
tatgatgtcagaggccaagaagcagtagaagaaggcttgttgccgttgaattcagaacat
gtcgacatgttaggagtgattggaatcccttcagatcccgtgagattctcaacggggatg
gactattttccagccttcagactgctcggcaaaaaggagtttaaagacaatgcaaatcaa
ctgtttggtaacaaagctataaacgactttgctttaacgatggtcgttcatattgaaaaa
ccagatactagctttatcttcgcagttctagaccctactgcttcgattatacaacttggt
gtgagtgtttcatcaaatagtcaaggcaacgaacaaaacatatcgttatattactcacca
acaactgctgatgtaaatacatccgtttcttccaaaatattagctagtttcaaactcgaa
aacctgctcaacaactgggcgcggattagcttcatggttaaagacgatattgtggaaata
tatttaaatggaacgaagaaaggaagacatcaagtgatcagggaaccgttagttcttgaa
gatgcctcttctatctacatcggaggaggtggtccagcccaaaggaagatgttcgttgga
tctttacaagaactgaaactttattcgaaccccgacgtcgccacctactacgaagaggct
attacccctttacttcgactttctccacgtcaaagatctgcaacactacaagcagggcat
tctgaatctcagtcttcaaaaattattcatcttcggacatcagagctatggtccgattat
ggcagtggctcaggaagcggacgtgatgaaataatagtgccaaccaaatatccttataga
cctcatgtaagtcacacaattaaaggtgagaagggctcacaaggtgagaaaggtataaaa
ggtgaaccaggaataagtcaaccaatgatttcccctcctccaccactgccaccacgatca
ggcttgaaaggggatcaaggacctcctggtctaatgggaccaattggagttccaggtcag
aagggagaaaaaggagaaatagtaaaacttgatttgagtggtcaaggaggaataggagct
aaaggagaaaagggagagagaggaatgactggcttcgcaggagtaaagggtgaaactggc
aaatctattgttggtcctccaggtaaacctggttcacctggctctactggtttacaaggt
ccaccaggtcctccaggtccaccaggacagtcatatggagaaccttcttctggatactct
ggcacattcattgaccttgagtcttctggagatgatcaaatagcaaagggaaaaggaatc
gttggaccacgtggacctcctggtcacactgggccccctggtcttccaggtttaaaagga
ttgccaggagataagggagaacgaggagagaatggcttaaatggcattgatggagaaata
ggaagagatggtgccaaaggagaacctggtgtacgaggacattcaggagaacctggccct
gtgggtcagaaaggagaaccaggtcaaaatggatatgatggtcgtgatggtttacctggc
ccaccaggaccaccaggagtaattgttggctcaattgatgatgagttatctggacactca
aattttgatggtagttcaactgggtcaatagctgtgaagggagaaaaaggagatcgtggt
taccctggacaaaatggacaacgaggacacccaggtgcaaatggtattgtaggacagaaa
ggagaacgcggatataagggagaacatggacaaaagggcgtatcaggactgcctggagag
caaggacttcggggtcgtcctggattagttggcggaccaggtgaaaagggagaaagagga
aaacctggaatgaaaggaccaaggggaataggtcgagttggccctgcaggtcgacctggc
ccccctggcccccctggaattcctcctgagattaaaacttccgatgatactgtaataata
aatggaagaaagggagaacctggcagtaccggtccagttggaccccagggaatcgctggt
ccacctgggcctcctggaccacccggtgttcctggattttccacagccgactccaatgga
aagggtctcaaaggagaaccaggtggttgtcgtagctgtgttggcctgaagggagaacgt
ggccctgttggaccaaaaggcagtatgggatatacaggtaaaaaaggtgtcaaaggaggc
aaaggaaacatgggtatgcctggatttacaggtcggcaaggacttcgtggacgtaaagga
gagcctggatatggccttaaaggcagagcaggagaaagagggctaccaggtcctcctgga
ataccaggtatatcagaaccttggaaatctgatggttctaatggattcaatagtaaagga
aacaagggtgaacgtggttatacaggccgttcaggacctcctggcccacctggcccacct
ggcccactttcttctccgtcatcaggagtgataataaatacaggttctggagatacagaa
agaatttacagaggagaaaagggagaaaaaggagacaaaggtgacaagtcagaggctagt
atatttgataaaagatattataaaggtaatgctggactaccaggaccaccagggccccca
ggaccaccaggaccaccaaataccggtagttatgctggctcaaatggacatggagatgca
tatagactttatagacaaaaaggacagaaaggagaaatgggagaaaaaggaagtacaggc
cggggtattcctggaattccaggagtatcaattccgggaagaccaggtccccgtgggcct
ccaggccctccaggacctcaacaacattcatatggtggttccagcactattaatgatcag
acttattctgcttcacatgcgattgcaacttatcgcaatatgggagaacttcaagatgtt
gctctaactatccctgttggaagtatagcttttgttcatgataaggaactattattaatt
cgactgaaagatgcatgggcagaaatccaaagcagacgcattgcacttccccggtatctg
gatcgcatcccactgccagttccaaaaccatctgagattaaatctggcagaaaaacaaga
atggaaacaacaactgtcctgactagtacacctaaaccacctgaaatacatgtacttcca
ccaaatcttgataaggaaaaatatcagcgaaaccgaaaagtactcaagttgatagcattg
aacaaaccactcacaggaaaaatgaatggagtaaatacaattgatttattttgtcatcaa
caagcacggagagcatcttttaaagcaacattccgtggtttcttatcaaatcaaattcaa
gatttgaaaacattaatctatgataaaaaagagcgtaattatccaattgtgaattcaaag
ggtgaaattcttgtggattcatgggagcacttaatcactggagatggaggttatttcaac
agctctgttccactctattcatttgatggtaccaacgtaatgactagctctagatggcca
cagaaatttgtatggcatggttcttcaacaaaaggtgagcgaaagagagacagattctgt
tccaactggcgttcatcgggaagaaataatgttggtgttgcatcatccctaatggctcat
cagtttctgggatatgaagagtttcattgcaacaacaatttcattgtcctatgcatacaa
attgccactatgaaacactattga
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