Octopus bimaculoides (California two-spot octopus): 106876043
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Entry
106876043 CDS
T04127
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03030
DNA replication
obi03420
Nucleotide excision repair
obi03430
Mismatch repair
obi03440
Homologous recombination
obi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106876043
03420 Nucleotide excision repair
106876043
03430 Mismatch repair
106876043
03440 Homologous recombination
106876043
03460 Fanconi anemia pathway
106876043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
obi03000
]
106876043
03032 DNA replication proteins [BR:
obi03032
]
106876043
03400 DNA repair and recombination proteins [BR:
obi03400
]
106876043
Transcription factors [BR:
obi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
106876043
DNA replication proteins [BR:
obi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
106876043
DNA repair and recombination proteins [BR:
obi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
106876043
MMR (mismatch excision repair)
106876043
DSBR (double strand breaks repair)
HR (homologous recombination)
106876043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
IBR
Motif
Other DBs
NCBI-GeneID:
106876043
NCBI-ProteinID:
XP_052832762
LinkDB
All DBs
Position
25:complement(1573221..1594222)
Genome browser
AA seq
556 aa
AA seq
DB search
MSYQLTSGALQTIINGENIENPILQILSSKKIPSSAGAERYRLLLSDGQLSYSSVMLATQ
LNSMMEDGSLDNMSVIKVNKYLCNIIQNDKKVIIVLDLSVIAKASEVGQKIGNPKSYRAG
EAAPAATENNTNCVPAASKPPSVSTSNRTPLGSGPVVNNKPPGLPTTPVGGGRIHAIAGL
SLYQNRLFRFSLLFQAYYVSRATLKMANKKFSSVKNDFEMTFNSDTVIELCTENTNLPTI
TYDFRPLKDLDQIEPNTIIDVIGVVTDVADITTVVGRQSNKEFSKRDLQLADQSGMSVRF
TIWGGDAENFQDNKNPVVAVKGAKVSEWGGRTLSLLSSGQMILNPDIREAHFLRGWYDRD
GCNMEFNTFQGDSAGVRGGNEWKTLEQVKTEKLGASKPDYFTSKATVIFIKKGSCMYMAC
PNENCNKKLIDQGDNQYRCEKCNQEFPNFKWRLILSTSIADHTGSQWITCFQECAESILG
VSSDALGNLKDMDEFAFDQVFQEASFKSYIFNLRAKFETYNDESRLKTICVSATPVDWKT
YGQRLIKEINNFGTGE
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgagttaccagttgacttcgggagcattacagactataatcaatggagagaatatagag
aatccaattcttcaaattttgagttcaaaaaagatcccaagttctgctggcgctgaacga
tatcgtcttttattgtctgatggtcagctgagttactccagtgttatgctggcaactcaa
ctgaactccatgatggaagatggctccctggacaacatgtcggttatcaaagtgaacaag
tacttatgtaacatcattcaaaatgacaagaaagttatcattgtgcttgatctatcagtg
attgcaaaagcttctgaagttggacagaagatcggtaatcccaaatcgtacagagctggt
gaagctgcacctgctgctactgagaacaacacaaattgtgttcctgcagcttccaaacca
ccgtccgtttccacatcaaacaggacacctttgggtagtggccctgtcgttaataataaa
ccacctggtcttcctacaactccagtaggaggcggcagaattcatgccattgcaggactc
tcgctctaccaaaataggttattccgtttttctttgttatttcaggcttattacgtgagt
agagccactctaaagatggcaaacaagaaatttagttctgtgaagaatgactttgagatg
actttcaactctgacacagtcattgagttgtgcactgagaacacaaatttgcccaccatc
acatatgattttagaccattaaaagacctggaccaaattgaacctaacactattattgat
gtaatcggtgtcgtcaccgatgttgcagatatcaccacagtggttggacggcaatctaat
aaggaattctcaaagcgtgacctgcaacttgctgaccagtcaggcatgtccgtccgattt
accatttggggaggcgatgctgagaacttccaagataacaaaaaccctgtggttgcagtc
aaaggagctaaagtttcagaatggggaggtcggaccttgtctttattatcaagcggacaa
atgattctaaaccccgacataagggaagctcatttccttcgaggctggtatgatcgagat
ggttgtaatatggaatttaacacttttcagggtgattcagctggtgttagaggaggtaat
gagtggaagacattggaacaagttaaaactgaaaagttaggggcctcaaaacctgattac
ttcacctcaaaggcaactgtgattttcataaagaaaggaagctgcatgtatatggcttgt
cccaatgaaaactgtaacaagaaactcatagaccagggagataaccaataccgatgtgag
aagtgtaaccaagagttccctaactttaaatggcgattgattttgtcgaccagcattgct
gatcatacaggcagccaatggattacgtgtttccaagagtgtgcagaatccattcttgga
gtctcatctgatgcgctgggcaatttaaaggatatggatgaatttgcgtttgatcaagta
ttccaagaagccagtttcaaatcctatattttcaatttgagagcaaaattcgaaacctac
aatgatgaaagccgtttgaagacgatatgtgtcagtgccaccccagttgactggaagaca
tatgggcaacgcctgatcaaagaaattaataattttggaaccggagaataa
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