KEGG   Octopus bimaculoides (California two-spot octopus): 106876251
Entry
106876251         CDS       T04127                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
obi  Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018  RNA degradation
obi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:obi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106876251
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106876251
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obi03019]
    106876251
   03041 Spliceosome [BR:obi03041]
    106876251
Messenger RNA biogenesis [BR:obi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106876251
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     106876251
Spliceosome [BR:obi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    106876251
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 106876251
NCBI-ProteinID: XP_052833460
LinkDB
Position
28:16413864..16444079
AA seq 162 aa
MLNYYFHEVPCPRGHNHNREAIFRFDLKACTQSSAVTIRHPVNFLPLSLLRTAVNHPMLV
ELKNGETYNGHLVSCDNWMNINLREVICTSRDGDRFWRMPECYIRGSTIKYLRIPDEVID
MVKEEVILKSKGRGDMKGRGGPQRGRGGRGKFSVCHCVVDRR
NT seq 489 nt   +upstreamnt  +downstreamnt
atgcttaattattatttccatgaagtcccatgtcctagaggccacaatcataacagagag
gcaatctttcgttttgacttgaaggcctgtacgcaaagctcagctgttaccataaggcat
ccggtaaatttcttgcccttatctttactcagaactgctgtcaaccacccaatgctggtg
gagttgaagaatggtgagacatacaacgggcatttggtcagttgtgacaactggatgaat
atcaacctacgagaggttatctgcacatcccgggatggtgatcgattttggcgaatgccc
gagtgttacattcgaggaagtacaattaagtatcttcgcatccctgatgaggtcatcgat
atggtgaaagaagaggtcatactgaagagcaaaggtcgtggtgacatgaaagggcgtggt
ggtccacagcgaggtcgtggtggacgaggtaagttctcagtgtgtcactgtgttgttgat
cgtcgttaa

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