Octopus bimaculoides (California two-spot octopus): 106876850
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Entry
106876850 CDS
T04127
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106876850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obi03041
]
106876850
03009 Ribosome biogenesis [BR:
obi03009
]
106876850
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106876850
Spliceosome [BR:
obi03041
]
Complex A
U2 snRNP components
U2 related factors
106876850
Complex B
106876850
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
106876850
Ribosome biogenesis [BR:
obi03009
]
Eukaryotic type
90S particles
Helicases
106876850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
SRP54
AAA_7
NACHT
TsaE
T2SSE
PhoH
AAA_29
Motif
Other DBs
NCBI-GeneID:
106876850
NCBI-ProteinID:
XP_014781058
EnsemblRapid:
LOC106876850
UniProt:
A0A0L8GHM8
LinkDB
All DBs
Position
2:complement(169008850..169058730)
Genome browser
AA seq
735 aa
AA seq
DB search
MSKRRIDVGDSSSKRNRDEDRHRESDKDHMKEGRKPEKKISIFEQFNIPKPQIQLNPFTG
LPYTPRYYELLRKRNALPVWEYKDKFTEMVNKNQILVLVGETGSGKTTQIPQWCLEWVRA
RYPKKGVACTQPRRVAAMSVAQRVSEEMDVCLGQEVGYSIRFEDCTSPKTVLKYMTDGML
LREAMSDPLLEAYGVIMLDEAHERTLATDILMGLLKEVSRQREDLKIIVMSATLDAGKFQ
NYFDHAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHICEHCDGDVLLFLTGQEE
IDEACKRIQREIDNFGPEIGDMKCIPLYSTLPPNLQQRIFEPPPAKKANGAIGRKVVVST
NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKC
FRLYTEKAYKNEMQENTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALE
LLNYLAALDDDGELTELGSMMAEFPLDPQLAKMVIASCDCNCSNEILSITAMLSVPQCFV
RPMEMKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHEDPQWSYDNFVNFRSMKSADNVR
QQLARIMDRFNLRRSSTEFASRDYYINIRKALVAGFFMQVAHLERTGHYLTVKDNQIVQL
HPSTCLDHKPEWVLYNEFVLTTKNYIRTVTDIKPEWLINIAPQYYDMVNFPECEAKRQLE
RIISRLSSKQHFEGF
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcgtcgtattgacgttggtgattcatcttcgaagcggaatagggatgaagat
agacatagagaaagtgacaaagaccacatgaaggaaggcaggaaacccgaaaagaagatt
tcgatcttcgaacagttcaatatccccaaaccacagatacagctaaatccatttacaggc
ttaccttacacacctcgctattatgaacttttgcggaaaagaaatgcattgcccgtatgg
gaatacaaggacaagttcactgaaatggtcaacaaaaaccaaatattggtgttggtcggt
gaaactggatctggtaaaactacacagattcctcaatggtgccttgaatgggtgcgagcc
cgttatcccaagaaaggtgttgcttgcactcagcccaggcgagtggccgcaatgtcagtt
gcccagcgtgtgtctgaagaaatggatgtatgtcttggacaggaagttggctacagcatt
cgatttgaagattgcacatctccaaagacagttttaaaatatatgacagatggtatgtta
ctccgtgaggctatgtctgacccacttcttgaagcctacggagtcattatgcttgatgaa
gctcatgaacgtactcttgctactgatatattgatgggattgctgaaagaagtcagccgg
cagagagaagacctaaagattattgttatgagtgctacactggatgctggtaaatttcag
aattattttgaccatgctccattgatgaatgtacctggacgaacccatcctgtcgaaata
ttttatacccctgaaccagagagagactacctggaagctgctatccggactgttattcaa
atacatatttgtgaacattgtgacggagatgttcttctctttttaactggtcaagaggaa
attgatgaagcgtgcaaacgtatccagcgagaaatcgataactttggtcctgaaattgga
gatatgaaatgcattccactttattcaacactacctcctaatctacagcaaaggatcttt
gaaccaccccctgcaaaaaaggccaatggagctataggtagaaaagttgtagtctctact
aatattgctgagacatcacttactattgatggtgttgtttttgtcatagatccaggattt
gctaaacagaaggtatacaaccctcgaatccgtgttgaatcacttttagtaactgctatt
agcaaggccagtgctcaacagagagcaggtcgtgctggccgtacacgaccaggaaaatgt
ttccgactctacactgaaaaggcttacaagaacgagatgcaagagaacacttacccagaa
attcttcgttcaaatctgggatctgttgttttacagttgaaaaaacttggtattgatgac
ttagtgcattttgatttcatggatccgccagctcctgaaaccctaatgcgtgccctagag
ttgctgaattacttggctgcactggatgacgatggagaattaactgaacttggttccatg
atggctgaatttccacttgatccacagctggctaaaatggtgattgcaagctgtgattgc
aattgttccaatgaaatcctttccatcactgcaatgttgtcagtcccgcagtgttttgtg
cgtccaatggagatgaagaaagctgcagacgaagcgaagatgagatttgcacacatcgat
ggcgaccatttgacgctgctcaacgtctaccatgctttcaaacaaaatcatgaagaccca
caatggagttatgacaattttgtgaatttccgatctatgaaaagcgctgataatgtccga
cagcagctggcccggattatggatcgatttaatttgcgtcgttcaagtacagagtttgca
agtcgggactactacatcaacattaggaaggctttggtagctggtttctttatgcaggtt
gctcatcttgagcgcactggtcattatctaactgtgaaagacaaccagattgttcagctc
cacccttctacatgtctcgaccacaagcctgaatgggtcctgtacaatgaatttgtactc
acaaccaagaattacattcgaactgttacagacatcaagccagaatggttgataaacatt
gcacctcaatattatgacatggtcaacttccccgaatgtgaagccaaacgtcaattggag
cgcattatatcacgcttgtctagcaagcaacattttgaaggattttga
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