Octopus bimaculoides (California two-spot octopus): 106877127
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Entry
106877127 CDS
T04127
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen34 isoform X1
KO
K15323
tRNA-splicing endonuclease subunit Sen34 [EC:
4.6.1.16
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
obi03016
]
106877127
Enzymes [BR:
obi01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
106877127
Transfer RNA biogenesis [BR:
obi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
106877127
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
Motif
Other DBs
NCBI-GeneID:
106877127
NCBI-ProteinID:
XP_014781412
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All DBs
Position
4:complement(15532517..15549203)
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AA seq
299 aa
AA seq
DB search
MSPIPSPRHSHLYQLSCKEELGTLPFTHVMLLRKQHRIVGTLVGALPRAPCQNNLLGLPL
QLSPEEVSVLLEKGIAHLIQEVFPNKLSPEEIQAYEEQRHQSYTEQIPLYQQERRMDTIR
NLSNIVKGKKAKRNQQLEHQKQLGMEIDDTEFEKEVEIDVDEIKIPPIDEKNSVVQIFTE
NPWINRTYKEAEWIFPSNAMQNLRYRVFKEFWEQGYFLTHGSKFGGDFLVYPGDPARYHS
FFIVRCVKQTETIPMMDIAAIERLGTSVRKTVVLCSLNDVNEVDFISLQWRGMGWKTTG
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgataccttctcctcgtcattcccacctatatcagctgtcctgcaaggaggag
ttaggcacgctgccttttactcatgtcatgttattaagaaaacagcacagaatcgttgga
acattggtcggtgctcttcctcgtgctccatgccaaaacaacttacttggacttccattg
cagctatcaccagaagaagtatctgtactcttagagaaaggtattgctcatctaattcaa
gaagtttttcctaataaactatcacctgaagaaatacaagcttatgaagaacaaagacat
cagagctacacagaacagatacctctctatcaacaagagcggagaatggatacaatacgt
aacttatctaatattgtaaaaggcaagaaagcaaaacgaaatcagcaattggaacatcaa
aaacaattgggaatggaaattgacgatacagaatttgaaaaagaagtagaaattgatgtt
gatgaaattaaaataccccctattgatgaaaaaaattcagttgtacaaatctttactgaa
aatccatggattaacagaacttacaaagaagctgaatggatattcccttcaaatgcaatg
caaaacttgcgatatcgagtattcaaggagttctgggaacaaggatactttttaacacat
ggttctaaatttggcggagacttcctcgtatatcctggtgatccagccagatatcattca
tttttcattgtgcggtgtgtgaaacaaacagaaacaattccaatgatggacatagcagca
attgagaggcttgggacatcagtaagaaaaacagtagttctctgctccctcaacgacgtc
aatgaagttgatttcatctcattacaatggaggggtatggggtggaaaacaacaggataa
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