Octopus bimaculoides (California two-spot octopus): 106878146
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Entry
106878146 CDS
T04127
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03013
Nucleocytoplasmic transport
obi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106878146
09122 Translation
03013 Nucleocytoplasmic transport
106878146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106878146
03041 Spliceosome [BR:
obi03041
]
106878146
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
106878146
Spliceosome [BR:
obi03041
]
Complex C
Other components
EJC/TREX
106878146
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106878146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Glyco_hydro_38N
Rop-like
Arm_3
Motif
Other DBs
NCBI-GeneID:
106878146
NCBI-ProteinID:
XP_014782757
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All DBs
Position
7:complement(75196837..75251810)
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AA seq
669 aa
AA seq
DB search
MSASTEFDFRIARNDFGQVLQSLLTKNLLSQCIPHVQSYHGNDSEKKLALDQALRDIVRI
VITEEMGCSVYREVITAAIEAANQDVCSASTPFVLLSDVFDMIILEQCEDIFNLVEEKVS
TWKSDTFYDAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLSRLFPLSEKSALNLMSQF
NLDNITVYNTNREESRLKNEVNEDRMEFDGEMEENNSNVPIDFNLYRKFWALQDFFRKPL
LCYEKVAWLTFTSNANEVLTAFSSYKLDDMKSPRKKLNRSYLKETQTYFAKYLTSEKLLD
LQLSDSNFRRYVLVQFLILVQYLNAPVKFKNANCVLSEEQNVWIKTTEEWVYQLLKETPP
DGETFAKSILHILRREENWNAWKNEGCPLFERHGSAGDIRPKTKVKRKSVGSDLIASGGK
LIKMGSPELTRLWNLCPDNTEACKSEKRVFLPTLEDFFADAIEQSDPEAMVEDEYKLVKD
QVFQWKALRLLARRSPHFFTHAPQPAVELPVYLESMVTRLAKEMPPPHEEMKTEIGEEED
IKAPSPDDGEEIKNDGTDIPSSTWKFNNDFLQGGSTDDLPINKHQIHDVAEGLGHDWKKL
AVELNFSDDVIAEFDSESHDVSQKALKMLTSWFETEAEHATPGCLRTALNEIGLLEVADQ
VFPDIEASN
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgtccacggagtttgactttaggatagctcgaaatgacttcgggcaagtcttg
caaagcctgctcaccaagaatctgctcagtcagtgtataccacatgtccagagttaccat
ggcaatgacagtgagaaaaaactggctttagatcaagcgctccgtgatattgttcgcatt
gttataaccgaagagatgggctgttctgtatacagagaagtgatcacagcagctattgaa
gctgctaatcaagatgtgtgttcagcttccacaccatttgtacttctatcagacgtcttt
gacatgatcattttggaacaatgtgaggatatcttcaatctggtcgaagaaaaagtcagc
acttggaagtctgacaccttttacgatgctggtaagaactatctgctgagaatgtgcaat
gatttgcttagaagactttccaaatctcagaatactgtgttctgtggtcggatacagctg
ttcctgtctcggttatttccactctctgagaaatcagctttgaacttaatgagtcagttt
aatttggacaatatcactgtttacaacacaaatcgagaggaatctcgcttaaagaatgag
gtgaatgaagacagaatggaattcgatggagaaatggaagaaaacaacagtaatgtacct
attgatttcaatctgtaccgcaagttttgggctttacaagatttcttccggaagcctctt
ctttgttatgagaaagtggcatggctgacctttacatcaaacgccaatgaagtgctcaca
gcattttctagttacaagcttgatgatatgaaatcccctcgcaagaaactcaaccgctca
tatcttaaggaaactcagacttattttgccaaatacttgaccagtgaaaagttacttgat
cttcagctctcagacagtaatttccggagatatgtgctagtacagttcctgattctcgtc
cagtacctgaatgctcctgtcaagtttaaaaatgccaactgtgtcctgtctgaagaacaa
aatgtttggattaaaacaacagaagaatgggtttaccaactacttaaagaaacacctcct
gatggagagacttttgccaaatctatactgcatatattaagacgtgaagagaactggaat
gcctggaaaaatgaaggttgtccgctatttgaacgtcatggtagtgctggtgatataagg
cctaaaactaaagtaaagaggaagagtgttggaagtgacttaatagcaagtggagggaag
ttgatcaaaatgggaagtccagagctgacccgattatggaatctatgtccagacaacaca
gaagcctgcaaatcagagaaaagagtgttcttgccaactttggaagatttctttgctgat
gccattgaacagtctgaccctgaagcaatggttgaagacgaatacaagttggtcaaggat
caagtgtttcagtggaaagcactcaggttactggctcgtcgcagtcctcatttctttact
catgctccccagccagcagttgaattacctgtttatcttgaaagtatggtcaccagacta
gccaaagagatgccaccgccacatgaagaaatgaagactgaaattggagaagaagaagac
ataaaggctccctctccggatgatggggaagaaatcaagaatgatggcactgatattcct
tcttccacttggaaattcaacaatgattttttacaaggtggtagcactgatgacctccct
atcaacaaacatcaaatccatgacgtggctgaagggttgggtcacgactggaaaaaatta
gctgttgagctgaatttctctgatgatgtgattgcagagtttgatagtgaaagtcacgat
gtttctcagaaagcattgaaaatgttgacatcatggtttgaaaccgaggctgaacatgcc
actcctgggtgtctccgtacagctttgaatgaaattggattgcttgaagtggccgaccaa
gtatttcctgatattgaagcaagcaactga
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