Octopus bimaculoides (California two-spot octopus): 106878204
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Entry
106878204 CDS
T04127
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03013
Nucleocytoplasmic transport
obi03015
mRNA surveillance pathway
obi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106878204
09122 Translation
03013 Nucleocytoplasmic transport
106878204
03015 mRNA surveillance pathway
106878204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106878204
03041 Spliceosome [BR:
obi03041
]
106878204
03009 Ribosome biogenesis [BR:
obi03009
]
106878204
03012 Translation factors [BR:
obi03012
]
106878204
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106878204
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106878204
mRNA cycle factors
Stress granule specific factors
106878204
Spliceosome [BR:
obi03041
]
Complex C
Other components
EJC/TREX
106878204
Ribosome biogenesis [BR:
obi03009
]
Eukaryotic type
90S particles
Helicases
106878204
Translation factors [BR:
obi03012
]
Eukaryotic type
Initiation factors
eIF-4
106878204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Utp25_C
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
106878204
NCBI-ProteinID:
XP_052827950
LinkDB
All DBs
Position
11:complement(54985753..55005177)
Genome browser
AA seq
449 aa
AA seq
DB search
MVKNQKFIYIAIFGEAEFWKTLSCKEEGSRPRDGQRMQWMDNIMSWWNKIGKATEKLALN
RDESRCNVRCTIHDDIERNVQQRKNKNCLYSVFTGFEKPSAIQQRAIKPIINGRDVIAQA
QSGTGKTATFALSILQCLDTQTRETQALVLSPTRELAVQIQKVILALGDYMNVQCHACIG
GTNIGDDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDESDEMLNKGFKEQIY
DVYRYLPPATQVLLISATLPHEILEMTGKFMTDPVRILVKRDELTLEGIKQFFVAVEREE
WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMQQKDRDDIMKE
FRSGASRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK
NDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaaaaccaaaagttcatctatatagccatattcggagaagcagagttctggaaa
acattatcatgcaaggaagagggtagtagaccaagagatgggcaaagaatgcaatggatg
gacaatatcatgagctggtggaacaagattggcaaggcaactgaaaaactcgcgcttaat
cgggacgaatcccgttgtaatgtcagatgtacgatacatgacgacattgaacgaaatgtt
caacaaaggaaaaataagaattgtctctattctgtatttacaggttttgagaaaccatct
gctattcaacagagagctataaaaccaattattaatggcagagatgttatcgctcaagct
cagtctggcactggaaaaacagctacttttgctctgtccattctacaatgtcttgataca
cagacccgtgaaacacaagctttggttctatctccaactagagaattggctgttcagatt
cagaaggttattttggctcttggagattacatgaatgtgcagtgccatgcttgtattggt
ggaacaaatattggtgatgatattcgtaaacttgattatgggcaacatgttgtatcaggg
actcctggcagagtttttgatatgatccgaaggagaaacctgcggacaaggtccattaaa
atgctggtccttgatgaatctgatgaaatgttgaataaaggttttaaagaacaaatttat
gatgtttatcgatatcttcctccagcaactcaagtgttacttatttctgccactttgcct
catgaaatccttgaaatgactggcaaatttatgactgatcctgtccgcattttagtcaaa
cgtgatgagttaactttggaaggaatcaaacagttttttgtagctgttgaaagggaagaa
tggaaatttgacactctttgtgatctttatgatactctaactataacccaagctgttata
ttctgcaacactaaaagaaaggttgactggttaactgagaaaatgagagaagccaatttc
acagtttcctcaatgcacggtgacatgcagcaaaaagacagagacgacattatgaaggaa
tttcgttcaggagctagtcgtgttctcataacaacagatgtgtgggcccgaggtattgat
gtccaacaggtatcactcgtaataaactatgatttaccaaacaatcgtgaattgtatata
cacaggattggacgttctggtagatttgggcgaaaaggtgttgccatcaattttgtgaaa
aatgatgatatccgtatcttgcgagatatagaacagtactattctactcagatagatgaa
atgccaatgaatgtggctgatcttatctga
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