Octopus bimaculoides (California two-spot octopus): 106879058
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Entry
106879058 CDS
T04127
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106879058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106879058
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106879058
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
106879058
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
106879058
NCBI-ProteinID:
XP_014783972
UniProt:
A0A0L8G583
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Position
5:9914285..9922341
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AA seq
248 aa
AA seq
DB search
MAGLELLSDQGFRVDGRRPHELRKIQCRLGVFGQADGSAYLEMGNTKVLAAVYGPHEIRG
SKSKAQHDKVLVNCQYSMATFSTGERKRRPRGDRKSQEMTLYLQQTFNAAIMTSFYPRSQ
IDIYVEVLQSDGGNYCACVNAATLAIIDAGIPIKDYVCACSAGFVNETPLVDMSYLEESS
GIPELITAILPQSEEVVLLEMNSRLHEDNLKKVLNQATKGCKDIYQILNEAVRHHLQDVV
LSVGINND
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atggcgggattagaattattgtcggatcaaggatttcgtgttgatggacgaagacctcat
gaattacggaaaatacagtgtcgcctcggcgtgttcggacaggctgatggttcagcttat
ttggaaatgggtaacacgaaagtcctggctgctgtttatggacctcatgagatccgtgga
agcaaaagcaaagctcaacacgacaaagttcttgtgaattgtcagtacagtatggcaacg
ttcagcactggagaaaggaagcgaagacctcgtggtgaccgcaaatcacaagaaatgacc
ctctaccttcagcaaacgttcaatgcagccattatgacttcattttatcctcggtcacaa
attgacatctatgttgaggtgttgcaatcagatggtggtaattactgtgcatgtgtgaac
gcagctaccctagctatcatcgacgctggtattcccatcaaagactatgtatgtgcctgc
tcagctggttttgttaacgagaccccactggtagatatgagctatctagaggagtcgtct
ggcattcctgaactgatcacagccattctacctcaatcggaggaggtggtactgctagag
atgaactctcgtctacatgaagacaacttgaagaaagttcttaaccaagctaccaaaggt
tgtaaagacatttaccaaatccttaacgaagctgtacggcatcacttacaagatgttgtt
ctttctgttggaataaataatgattaa
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