Octopus bimaculoides (California two-spot octopus): 106879226
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Entry
106879226 CDS
T04127
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03013
Nucleocytoplasmic transport
obi03015
mRNA surveillance pathway
obi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106879226
09122 Translation
03013 Nucleocytoplasmic transport
106879226
03015 mRNA surveillance pathway
106879226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106879226
03041 Spliceosome [BR:
obi03041
]
106879226
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106879226
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106879226
Spliceosome [BR:
obi03041
]
Complex C
Other components
EJC/TREX
106879226
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106879226
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
DUF7632
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-GeneID:
106879226
NCBI-ProteinID:
XP_014784192
UniProt:
A0A0L8G4U5
LinkDB
All DBs
Position
2:129449818..129459216
Genome browser
AA seq
427 aa
AA seq
DB search
MADNENENELLDYEEEDNETTADGTGDGPTKKDVKGTYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLAH
TRELAFQISKEYERFSKYMNNVKIAVFFGGLPIKKDEEVLKKNCPHIVVGTPGRILALTK
NSKTLVLKHVKHFILDECDKMLNELDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCK
KFMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRC
MALAQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPDDSDTYLHRVARAGRFGTKGLAITFVSDENDAKVLNDVQDRFEVNITELPDEIDI
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgataatgaaaacgagaatgaacttcttgattatgaagaggaggataatgaaacc
actgctgatggaactggcgatggacccacaaaaaaagacgtgaaaggaacttatgtgtca
attcacagttctggtttccgagatttccttttaaaacctgaattacttcgggccattgtt
gattgtggttttgaacatccttctgaagttcaacatgaatgtatacctcaagctattttg
tccatggatgtgttgtgtcaagcaaagtccggtatgggtaaaactgcagtatttgtgctg
gctacacttcagcagcttgaacctgtggatggccaggtgtctgtgcttgttctagcacac
actcgagagcttgcatttcaaattagtaaagaatatgaaagatttagtaaatacatgaat
aatgtgaaaattgctgtcttttttggtggtttacccattaaaaaagatgaagaggtcttg
aaaaagaattgtccccatatcgttgttggcactcctggacgtatcctagcattgacaaaa
aacagcaaaacattggttttaaaacatgtgaaacattttatacttgatgaatgtgacaag
atgttgaatgaattagatatgcgaagagatgtgcaagaaatcttccgtatgactccacat
gagaagcaggtcatgatgttcagtgcaacactgagcaaagagattcgtccagtttgcaag
aaatttatgcaagatccaatggaagtatatgttgatgatgattctaaacttactttacat
ggattgcaacaacattatgttaaactgaaagacaatgaaaagaatcgtaaattgtttgag
ctgctggatgttcttgaatttaaccaggtgataatatttgtcaagtctgtacagcgctgc
atggctttggctcagctacttgttgaacaaaacttccctgccatagcaattcatagagct
atgactcaagaagaaagattatcgcgttatcaacagtttaaagacttccagaaaaggata
ttagtggcaactaatctttttggtcgtggaatggatattgaaagagtgaatattgttttc
aactatgacatgcctgatgattcggatacttatttacatagagttgcccgtgctggtaga
tttggaacaaaaggtttggctattacatttgtctcagatgaaaatgatgccaaagtttta
aatgatgttcaagacagatttgaagtcaatatcacagaacttcctgatgaaatagacata
tcttcatacattgaaggcagataa
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