Octopus bimaculoides (California two-spot octopus): 106879893
Help
Entry
106879893 CDS
T04127
Name
(RefSeq) exosome complex component RRP42 isoform X1
KO
K12589
exosome complex component RRP42
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106879893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106879893
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106879893
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
106879893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
106879893
NCBI-ProteinID:
XP_014785116
UniProt:
A0A0L8G0U0
LinkDB
All DBs
Position
3:106052700..106109997
Genome browser
AA seq
291 aa
AA seq
DB search
MADVLLSDAEKTFILHGIQDNLREDGRGCDDYRYMEIETDVVSNTSGSARLRLANTDVLV
GVKAELGPPEPIKPDLGRLEFFVDCSANATPEFEGRGGEVLATEISTMLSQAYGNLNALD
LKSLCVIPNSQCWILYVDILLLECGGNLFDAVSVAVKAALFNTRIPNVSVLKGDEGQMEL
EISDDPYDVKQLDTTYCPCLVTLSKIGYFHVVDASPKEEACCLARLIMGVTESGVITAMK
KEGSGSLDPESIYDMMETGKKVGEILGKNLSAILKEEELLDKKKKAVGFLK
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgttgttgagtgacgctgaaaaaacatttattcttcatggaattcaggat
aatcttcgagaagatggccgtgggtgtgatgattacagatatatggaaattgaaacagat
gttgtctcaaataccagtggttctgcccgtttacgcttagccaatactgatgtattagtt
ggagtgaaagcagaattaggtccaccagaaccaattaaaccagaccttggtcggttagag
ttctttgttgactgctcagccaatgccacaccagaatttgagggtcgtggaggagaggtt
ttggctactgaaattagcaccatgttgtcacaagcctatggaaatctgaatgctcttgac
ctgaaatccttatgtgtcattccaaattcgcaatgttggattctttatgttgatattttg
ttacttgaatgtggtggtaatttgtttgatgctgtctcagttgctgttaaagcagctctc
tttaataccagaatccccaatgtgtctgttctaaaaggtgatgaaggtcaaatggaactg
gagatatcagatgatccatatgatgtcaaacaacttgacacaacatactgtccatgtttg
gtaactttaagcaagattggttattttcatgttgttgatgccagccctaaagaagaagct
tgttgcttagccagattaataatgggtgttacagaaagtggtgtaataactgcaatgaag
aaggaagggtccggaagtttagatcctgagagtatatatgatatgatggagactggaaaa
aaagttggtgagatacttggaaagaatttgtctgccatacttaaagaagaagaattgtta
gacaagaaaaagaaagctgtgggttttttaaaataa
DBGET
integrated database retrieval system
