Octopus bimaculoides (California two-spot octopus): 106880622
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Entry
106880622 CDS
T04127
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106880622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obi03041
]
106880622
03009 Ribosome biogenesis [BR:
obi03009
]
106880622
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106880622
Spliceosome [BR:
obi03041
]
Complex A
U1 snRNP components
U1 related factors
106880622
Complex B
106880622
Ribosome biogenesis [BR:
obi03009
]
Eukaryotic type
Pre-60S particles
Helicases
106880622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
Ferritin
DUF3419
Motif
Other DBs
NCBI-GeneID:
106880622
NCBI-ProteinID:
XP_014786133
UniProt:
A0A0L8FX05
LinkDB
All DBs
Position
5:19714801..19729815
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AA seq
746 aa
AA seq
DB search
MSRRERSYDSGRADRKGLSRGLGGMRFGGGRGGSSGLGGRLNKNSQPGERLRKPRWDLSR
LPKFEKNFYREHPNVTNRHLDEVQAFLKSNDTTIRGRNPPKAIFSFHEAGYPDYVMEGIA
KCGFANPTPIQSVGWPIALSGRDIVGIARTGSGKTLGFLLPAIVHINHQPYLERGDGPIC
LVLVPTRELAQQVQEVAIEFGRHSKVRNSCVYGGAPKGPQIRDLERGAEICIATPGRLID
FLEAGKTNLRRTTYLVMDEADRMLDMGFEPQIRKIMEQVRPDRQVLMWSATWPKEVRSLA
EEFLKDYIQINIGALQLSANHNILQIIDVCNESEKDHKLVKLLEEIMNEKENKTLVFVET
KRRADELQRRMKRDGWPVMAIHGDKSQPERDWVLSEFRTGRIPIMIATDVASRGLDVDDI
KFVINFDYPATSEDYVHRIGRTARSNNTGTAYTFFTPANMKQAQDLMSVLKEANQVINPK
LMQLAESARGIFGKGRSRYRGGRDRDNGSGGRFGSSGSRGDRGGGSRGSSYGSGRDRGGG
SRGGYGGSSGSGNYGAGSQSRGSFGSKPGGSSERNRFSANSGNFNQNNVGSYGTNVGNKT
GGYGMHSKPNYNTGSNVGPKSNYPSQNSSYPTANSSNYGTQNSSRPVQAPGQYGSQKPQN
SYQMNGYGGAPAPPTQSTSSNQQNGNATSGAGTQNLQNLQNMAFMYSQWMQNQPGGNSQQ
QPPPPPPGKTTNPPPPPSTNYNYQYR
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaagagagagatcgtacgattctggtcgcgccgaccgaaaaggtttatcacgt
ggtttgggtggcatgagatttggtggtggccgtggtggatctagtggtcttggaggccgt
cttaacaaaaacagtcaacccggtgaacgtcttaggaaaccaagatgggatttatcaaga
ttgcctaaatttgagaagaatttttacagagaacaccctaatgttaccaatagacattta
gatgaagttcaagcctttcttaaaagtaatgacactacaattcgtggtagaaatcctcca
aaggctatattctcatttcatgaagcaggttatccagattatgtaatggaagggattgca
aaatgcgggtttgctaatccgacacccattcagtctgtaggctggcctatagcactgtct
ggtagagatatagttggtattgccagaactggttctggtaagacattaggattcttgtta
cctgctatagtgcatataaatcaccaaccatatttagaaagaggagatggtcctatttgt
ttagtacttgtacctactagagagctagctcaacaggttcaggaagttgctattgaattt
ggccgacattcaaaggtacgcaacagttgcgtttatggaggtgctcctaaaggcccccaa
atcagagatttggaaagaggtgcagagatttgcattgctacaccagggcgtcttatagac
ttcttagaagctggtaaaacaaatcttaggagaactacatatttagttatggatgaagct
gatagaatgttggatatgggctttgaaccacaaattagaaagattatggagcaggttcgg
cccgaccgccaagtgcttatgtggagtgctacttggccaaaagaagtgagatcattagct
gaggaattccttaaggactacattcagatcaacataggtgctctgcaacttagtgcgaac
cacaatattttacaaataattgatgtttgtaatgaatctgagaaagatcacaaattagta
aagcttctagaagagataatgaatgaaaaagaaaacaaaacattagtttttgttgagact
aaacggagagcagatgagttacaaagaagaatgaagcgtgatggctggcctgttatggct
attcatggtgataagtcacaaccagagagagattgggtgttaagtgaattcagaacaggg
cgtataccaattatgattgctactgatgttgcatctagaggcttagatgtggatgatata
aaatttgtgataaactttgactacccggccacctcagaagactatgttcaccgtattggg
cgaactgctcgcagcaacaatactggcactgcgtacactttcttcactcctgctaatatg
aaacaagctcaagaccttatgtctgtgcttaaagaagctaaccaagtcatcaatcctaaa
ttaatgcaattggcagagagtgcaagaggaatatttggaaaaggacgcagtcgctaccga
ggtggcagggatagagataatggaagtggtggccgctttggatctagtggcagccgtggt
gatcgtggaggtggttctcgtgggagcagctatggtagtggccgtgatcgtggaggtggt
tctcgtggaggttatggtgggtcttcaggttcaggaaactatggagctggtagtcagtcc
agaggatcgtttggatctaagccaggtggtagttctgaaagaaatagattttcagctaac
tctggtaactttaaccaaaataatgtaggaagttatggcactaatgtagggaacaagacc
ggtggttatggaatgcattcaaagcctaattataatactggtagtaatgtgggtcctaaa
tctaattatccatctcagaattccagttatcctacagcaaatagttcaaactatggcacc
cagaatagttcacggcctgtacaagcacccggacagtatgggtctcaaaaaccccagaac
tcctatcagatgaatggttatggcggtgccccagcacctccaacacagtcaactagttct
aatcaacaaaatggtaatgcaactagtggggctggtacacagaatttgcaaaacttacag
aatatggctttcatgtacagtcagtggatgcaaaatcagccgggtggtaactctcagcaa
cagccccctcctccacctcctggaaaaacaaccaatccgccacctccaccatctaccaac
tataattatcagtatcgttaa
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