Octopus bimaculoides (California two-spot octopus): 106881185
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Entry
106881185 CDS
T04127
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106881185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106881185
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106881185
mRNA degradation factors
5'-3' decay
Lsm complex
106881185
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SPT2_N
DUF5401
Motif
Other DBs
NCBI-GeneID:
106881185
NCBI-ProteinID:
XP_014786961
UniProt:
A0A0L8FUQ8
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Position
22:complement(12820162..12829125)
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AA seq
179 aa
AA seq
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MLVLQDVSRWRYVRGPGTDSVVGEKRTEAAAAEAATSSAFLYLEMSYLPGTASLVEEIDK
KLLVVLRDGRTLIGFLRSVDQFANLALHRTIERIHVGKKYGDIPRGIFIIRGENVVLLGE
IDVENENSQDLEQVSIDEILEMQREQQLRQLEEEERKKKALLERGVHPHTDSIQDDYFF
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgttagttctgcaagatgtcagtagatggcggtatgttcgcgggccgggcaccgattca
gttgttggagagaaaaggacggaggcggcggctgcagaagcagcaacatcatcggctttt
ctctatttagagatgtcttatctgcctggaacagctagtttggtcgaagaaatagacaaa
aagctgcttgtcgttctccgagatggtcgtacattaataggtttcttacgaagtgttgac
cagtttgccaaccttgctctacatcgaacaatcgaacggattcatgttggtaagaagtat
ggtgatattcctcgtggaatcttcattatccgtggagaaaatgttgttttattaggagag
atagatgtggagaacgaaaacagccaagatctggagcaggtctccattgatgaaatactt
gagatgcaaagggaacagcaattgagacaattggaagaggaagaaagaaagaagaaagct
cttttggaacgtggagttcatcctcatacagattccatccaagacgattatttcttttaa
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