Octopus bimaculoides (California two-spot octopus): 106881622
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Entry
106881622 CDS
T04127
Name
(RefSeq) collagen alpha-1(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106881622
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
obi00536
]
106881622
Glycosaminoglycan binding proteins [BR:
obi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106881622
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Cas_Csy1
SPACA6_N
Motif
Other DBs
NCBI-GeneID:
106881622
NCBI-ProteinID:
XP_014787572
LinkDB
All DBs
Position
10:complement(<85149654..85201901)
Genome browser
AA seq
1052 aa
AA seq
DB search
MKGETGSLGPQGVNGYPGSRGVKGDRGLRGSLGDKGDVGSFGLDGEKGDLGRRGDKGRKG
EMGPMGIEGIEGKKGEYGPPGETGQPGPPGEKGRIGIPGFPGYPGPPGEKGERGVIGRRG
KRGSKGKGGLLGPPGERGERGPIGQRGERGARGIPGPTGPKGDDGQPGPPGFQGEQGIQG
IPGPNGPPGPTGPGGHPGKDGSPGFPGERGEIGPPGPPGAVGPVGVMGPTGPPGDAGPPG
DPGPPGNLGPPGDTGLPGEAGTPGEAGPPGNPGPDGPVGPSGAPGFPGDRGLPGPPGKDG
KNGEPGNSGPRGPTGDKGERGEIGKPGDRGVPGRRGLIGSQGPRGLKGDPGPEGNPGDAG
PVGSQGPRGYPGPAGPVGSPGEEGDKGDLGPSGERGPKGDEGSMGPIGPQGPTGLQGAPG
PPGPTGEFGAPGVQGPTGRKGSDGPRGLRGQTGTPGLQGNPGLPGEKGEAGDQGPKGPPG
PAGPTGPPGTSGPMGPPGVPGNTGPQGPLGEKGAPGSSGPPGIPGKEGEVGLPGNIGQKG
DMGKTGLQGKVGTRGPRGPDGPKGEPGVVGYPGPPGPLGNAGAKGEAGRPGTDGKDGLQG
TIGPLGAQGETGLPGLTGKQGPAGSPGLQGVAGEIGKKGDRGFPGPMGQQGPPGPSGPLG
PVGNKGLRGQPGPVGESGPIGPAGEPGMKGLPGPRGPAGLKGDSGVKGAKGHQGQIGDLG
SPGPIGPKGEPGKRGRAGKRGSKGPMGPPGPEGPPGADGPPGPQGLEGPPGPKGESGMTG
PKGEQGHTGPAGPAGAPGEAQAIPLDYLGGRPRHQKRKKKKKRKKRSLDSKEVDEDDDNE
TIDGLKQVEGIIKEMANQKITIKEGLEDVVNKMFEEIDELAEEIKNFKYPKGTKENPAVS
CRDIYLGHPTFQDGWYWIDPNMGALNDSIHVWCNLTAHGETCVYPLRKRRMVIPRKWDRD
KKELKWFSEIENGFKIEYSSRVQLGLLRLNSNFVTQRFTYFCSNSAAWYDQDSQGFEHAL
TLLGSSAHEFETRDLVGSAVPFDGCKSHRTNT
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtgaaactggttcacttggacctcagggagttaatgggtacccaggatcacgg
ggagttaagggtgacagaggtttaagaggttctttgggagacaagggagatgtgggatca
tttggactggatggagaaaagggtgacttaggtagaagaggggacaagggaagaaaagga
gaaatgggaccaatgggaattgaaggaattgaaggaaagaagggtgaatatggacctcct
ggtgaaactggacaaccaggcccacctggagaaaagggacgcatcggaatccctggcttc
ccaggataccccggcccacctggagaaaagggtgagcgaggtgtgattggaagacgagga
aaacgaggcagcaaaggaaagggtggtttgcttggaccacctggagagagaggtgagcgt
ggaccaattggacaacgaggagagagaggtgccagaggtattcctggacctactggtcct
aaaggagatgatggtcaacctggtccaccaggattccaaggagaacaaggtattcaagga
attccaggccctaatggaccacccggaccaactggacccggtggtcatccaggcaaagat
ggttctccaggattcccaggcgaaagaggagaaatcggtccaccaggcccacctggagct
gttggtcctgtcggtgtgatgggtccaactggcccacctggcgatgccggaccaccagga
gatcctggaccacctggaaatcttggcccacctggagatactggactacctggagaggct
ggaacccctggagaagctggaccgcccggaaaccctggacctgatggccctgttggacct
tcaggtgcccctggattccctggtgacagaggtttaccaggtccacctggcaaagatggc
aaaaatggagagccaggtaactctggtccacgcggacccacaggtgacaaaggagaacga
ggagaaattggcaaacctggtgaccgaggtgttccaggacgaagaggtttaatcggttct
caaggaccccgaggattgaagggagatccaggacctgaaggtaatcctggtgatgctgga
cctgttggatcccagggtccaagaggttatcctggaccagccggacctgttggatcccct
ggagaagaaggagacaagggagaccttggaccttcaggagaacgtggtcccaaaggagat
gaaggtagcatgggaccaattggacctcaaggaccaacaggtttgcaaggagcaccagga
ccaccaggaccaacaggtgaatttggtgccccaggtgttcaaggaccaacaggacgtaaa
ggtagtgatggtccacgtggattaagaggtcaaactggaactccaggacttcagggtaat
ccaggacttccaggagaaaaaggtgaagctggagatcaaggacccaagggcccacctgga
cctgccggacccactggaccaccaggaacaagtggccccatgggaccacctggtgtacct
ggaaatactggccctcaaggaccattgggagagaaaggagcccctggttcatcaggacct
cctggtatacccggaaaagaaggagaagttggtcttccgggtaatattggacaaaaagga
gacatgggtaagacaggtctgcaaggaaaagttggtaccagaggaccacgaggccctgat
ggaccgaaaggagaacctggtgttgttggctatcctggaccacctggacccctcggtaat
gctggtgcaaagggtgaagcaggtcgacctggtactgatggaaaagatggactacaagga
actattggaccactcggtgcccaaggtgaaactggattaccaggtttaacaggaaaacag
ggaccagctggtagccctggacttcaaggagtcgctggagaaattggcaagaaaggtgac
cgtggttttcctggacctatgggacagcaaggtccaccaggacctagtggaccacttgga
ccagtaggaaacaagggacttcgtggacaaccaggaccagtgggtgagagtggacctatt
ggaccagcaggtgaacctggaatgaaaggattgccaggacccagaggcccagcaggactt
aaaggagactccggagtgaaaggtgccaagggtcatcaaggacaaattggagatttagga
tcaccaggacctatcggacccaaaggagaaccaggaaagagaggcagagctggaaagaga
ggaagcaaaggaccaatgggaccacctggacctgaaggaccaccaggagcagatggacca
cctggaccacagggattggaaggaccaccaggacctaaaggagaaagtggaatgactgga
cccaaaggagaacaaggacatactggaccagcaggaccagcaggagctcctggagaagct
caggccattcctcttgactacttgggtggcagaccaagacaccagaagagaaagaagaag
aagaagaggaagaagcgatcacttgatagtaaagaagttgatgaggatgatgacaatgaa
accattgatggattgaaacaagtagaaggaataattaaggaaatggccaaccagaagata
accatcaaggaaggtcttgaggatgtggttaataaaatgtttgaagaaattgatgagctt
gcagaagaaatcaaaaatttcaagtatccgaaaggaacaaaagaaaatccagcagtttca
tgtagagatatttatctaggacatcctaccttccaagatggatggtattggattgatcct
aacatgggtgctctaaatgattcaatccatgtatggtgtaacctgacggcccatggagag
acctgtgtctatcctctgcgaaaaagaagaatggttataccaagaaaatgggacagagat
aaaaaggaactgaaatggttcagcgaaattgaaaatggatttaagattgaatacagttcc
cgagtacaattaggtctcttgcgattaaacagcaactttgttacacaacgcttcacttac
ttctgctcgaattctgcggcctggtacgaccaggattctcaaggatttgaacacgcgctg
actctactaggaagcagcgcgcatgagtttgagacgagagatcttgtaggtagtgcagtg
ccttttgatggatgcaagagccaccggacgaacacg
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