Octopus bimaculoides (California two-spot octopus): 106881676
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Entry
106881676 CDS
T04127
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
KO
K13175
THO complex subunit 6
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03013
Nucleocytoplasmic transport
obi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106881676
09122 Translation
03013 Nucleocytoplasmic transport
106881676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106881676
03041 Spliceosome [BR:
obi03041
]
106881676
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
106881676
Spliceosome [BR:
obi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106881676
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Beta-prop_THOC3
WD40_Prp19
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_NOL10_N
Beta-prop_TEP1_2nd
DSE1_N
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
CFAP251_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_ACSF4
Beta-prop_WDR41
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WDR54
Beta-prop_WDR75_1st
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
106881676
NCBI-ProteinID:
XP_014787628
LinkDB
All DBs
Position
16:18219753..18269013
Genome browser
AA seq
356 aa
AA seq
DB search
MPSSLHKLFPESDMHERDLAARQQMYTSIYAIVFSPCGKYLAAGNNYGYCAIFSLPSSLS
PEATENSWKPLFTFKASDDGPICSMTSTSRELICGCSGYIKAWLWSHIIKRTNKLAWALI
IPTKSFSVSEINSMVTDNKNGEKNLYAGCGDNLIYIYDLETGSLKSTLSGHKDYIHCVTL
CNTRQECVSAAEDGTVRIWDARSSNEAICMLEPYKNEMCGRPEFGKWLGCVAMDTGDDWL
VCGGGPKLSLWHMRSLSATTAFDTPKSCQKHALIHQDTILSAGSEPSVFHWSLNGELKAK
IPCTPTCVFKVDVNTNSKSNKVLCVAGNSSKLDVSTNFRYKAFSLTFHSSENVFTK
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgtctcttcacaaactttttcccgaatcagacatgcatgaacgagacttagct
gctcgtcagcaaatgtatacaagtatttatgccatagttttctcaccttgtggcaaatac
ttagcagctggtaacaactatggatattgtgctatattcagtttaccaagttccttgtct
cctgaagccactgaaaattcttggaaaccactgtttacatttaaagcctcagatgatggt
ccaatatgttccatgacgtctactagtcgagaattaatatgtgggtgcagtggctacata
aaggcatggctctggagtcatattatcaaacgaacaaataaattggcctgggctttgatt
atacccacaaaaagcttttctgtttctgagattaattccatggttactgataacaagaat
ggagagaaaaacctttatgcaggatgtggtgacaatcttatctacatttatgatctggaa
actggttcattaaagtcaacattgtcaggacacaaagattatatacattgtgtgacactg
tgtaacactcggcaagaatgtgtgtctgctgctgaagatggtactgtccgaatctgggat
gcaagatcttccaatgaagccatttgcatgttggagccatacaagaatgagatgtgtggc
cgtccagaatttggcaagtggttaggatgcgttgccatggatacaggagatgattggctg
gtgtgtggtgggggaccaaagctctctttgtggcacatgagatctttgtctgcaacaact
gcatttgatactcccaagagttgccaaaaacatgctttgattcaccaagatacaatttta
tcagccggcagtgagcccagtgtgttccattggtcgctaaatggcgaactgaaagctaaa
attccttgtacaccaacatgtgtcttcaaagtggatgtaaatactaactccaaaagtaac
aaggttctatgtgtggcagggaacagttcaaaactcgatgtgtctaccaacttccgttat
aaagctttctcattgacatttcattcatctgaaaatgttttcaccaaataa
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