Octopus bimaculoides (California two-spot octopus): 106881825
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Entry
106881825 CDS
T04127
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
obi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106881825
09123 Folding, sorting and degradation
03018 RNA degradation
106881825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106881825
03041 Spliceosome [BR:
obi03041
]
106881825
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106881825
mRNA degradation factors
5'-3' decay
Lsm complex
106881825
Spliceosome [BR:
obi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106881825
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TFIIA
Chimallin_Phikzvirus
ATP11
VPS13_N
DUF4407
Motif
Other DBs
NCBI-GeneID:
106881825
NCBI-ProteinID:
XP_014787825
LinkDB
All DBs
Position
18:complement(15621493..15628476)
Genome browser
AA seq
140 aa
AA seq
DB search
MSLQQQQKRAAPAELQPQQQPQQQQQQQQQQQQQQSVTDKNKERKRKETILDLSKYLDKG
IRVKFSGGREVSGILKGHDPLLNLVLDGTIEYLRDPDDPYKLTEDTRTLGLVVCRGTSVV
SICPADGMEAIPNPFIQQDG
NT seq
423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttcaacaacaacaaaaacgcgccgctcctgcggaattgcaacctcaacaacaa
ccacagcaacagcaacaacaacaacagcagcagcagcaacaacagtctgttactgacaag
aacaaagaacggaaaagaaaggagactatcttagatttgtctaaatacttagacaaagga
attcgcgtaaagttcagtggcggcagagaagtaagtggtattcttaaaggtcatgatcct
ttactgaatcttgtgttagatgggacaattgaatatcttagagaccctgatgatccatac
aaattaactgaagatactcggacgcttggtttagtagtttgccgaggaacctcagtagta
tctatttgtccagctgatggaatggaagctattccaaatccttttatacagcaagatggt
tga
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