Octopus bimaculoides (California two-spot octopus): 106881995
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Entry
106881995 CDS
T04127
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106881995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106881995
03041 Spliceosome [BR:
obi03041
]
106881995
03009 Ribosome biogenesis [BR:
obi03009
]
106881995
03016 Transfer RNA biogenesis [BR:
obi03016
]
106881995
Enzymes [BR:
obi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106881995
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106881995
Spliceosome [BR:
obi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106881995
Complex C
U4/U6.U5 tri-SnRNP related factors
106881995
Ribosome biogenesis [BR:
obi03009
]
Eukaryotic type
Pre-60S particles
Helicases
106881995
Transfer RNA biogenesis [BR:
obi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106881995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Zot
Death_3
Motif
Other DBs
NCBI-GeneID:
106881995
NCBI-ProteinID:
XP_052825381
LinkDB
All DBs
Position
7:complement(49918355..49951019)
Genome browser
AA seq
1004 aa
AA seq
DB search
MASTFGDDLFDIFESKAENSKVTDKKNEEEKISVEDTQRAEDLLRSIVKKREIDNPDVIS
SKKLKADHEDLAAAAEVMPRIQVHKVETLESCTHEVALPPDEEFVPLKPPPEKPAQEFPF
ILDPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLQKKQRVIYTSPIKALSNQK
YRELFEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMR
DKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHNQPCHVVYTDYRPTPLQH
YIFPAGGDGIHLVVDENGEFREENFATAMQVLQEAGGNARGDMGLRGRKGSVRDNSNCYK
IVKMIMERNFAPVIVFSFSKKDCEAYALQLTKLDFNSAEEKNLVVEVFNNAIDSLSDSDK
KLPQVENVLPLLKKGIGIHHGGLLPLLKETIEILFAEGLIKALFATETFAMGLNMPARTV
LFTSARKFDGKDFRWITSGEYIQMSGRAGRRGIDDRGIVILMVDEKMSPMAAKNIVQGEA
DPLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYATIPQLLENIRKREKDHTNLK
IPNEEQIATYYKIRQQLDALAVEFQGYITKPQNILQFLQPGRLIKVKNTDDDFGWGVVVN
VQKKADQSKLESDVQYVCEVLLHLSPESAHTHSSLSIKPCPPGQKGEMQVVPILIHLISS
ISSVRLYVPKDLRSLDSRQSILKSVQVLHISYFCPFQKIEAFEHRMYSHPLHKDPKLEEY
YSLYERKAKLGQEIKKIKLEMKKKKSLLQMDELKCRKRVLRRLGYATPSDVIEMKGRVAC
EIDSGQELLLTELIFHGVFTDLTVQQSCALLSCFVCQEKASETPKLTETLRGPLRIMQET
ARRIARVSKEAKIEMDEETYVDSFKPHMMDVVNAWCNGAEFAQICKMTDIFEGSVIRIMR
RLEEMLRQMCQASKAIGNTELESKFSEGIRKIKRDIVFAASLYL
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaccttcggagacgatcttttcgatatatttgagtcgaaagccgagaattct
aaagtaactgataaaaaaaatgaagaagagaaaatatcggttgaggatacacaaagggct
gaggatttactcaggagtatcgttaaaaagcgagagattgacaaccctgatgtaattagt
tccaagaaattaaaagctgaccatgaggatcttgctgcagctgcagaagttatgcctcgt
atccaggtccacaaagttgagactttggagtcttgcacacatgaggttgctctacctcct
gatgaagaatttgttcctttgaaacctccccctgaaaaacctgctcaggaatttcctttt
attcttgatccattccaaaaggaagcacttttatgtttagaaaacaaccagtctgtattg
gtatctgcacacacatcagctggcaaaacagttgttgctgtctatgccattgcaatgtcg
ctccaaaagaagcagcgtgttatatacacatctcctattaaagcattaagcaaccagaaa
tatcgagaattgtttgaagagtttcaagatgttggtttgatgaccggagatgtaactatc
aacccaactgctagttgtttagtcatgacaactgaaattttgagaagtatgttatatcga
ggatcagagatcatgagagaagttgcttgggtgatatttgatgagattcattatatgaga
gataaagaacgaggtgttgtttgggaagaaaccattatcctccttcctgataatgtacac
tatgtatttctatcagccactatccctaatgcacgacaatttgctgagtggatatgtcat
cttcataaccagccatgtcatgttgtttacactgattatcgaccaacaccattgcaacat
tacatctttcctgcaggtggtgatggcattcatttagtggtagatgagaatggagaattt
agagaagagaattttgcaactgccatgcaagttttacaagaagctggaggaaacgctcga
ggagatatgggacttcgtggaaggaaaggcagtgtcagagataattccaactgctacaaa
attgtgaagatgattatggaaagaaactttgctcctgtaattgtgtttagttttagcaag
aaggattgtgaagcttacgctctccaactgaccaaactggattttaactctgctgaggaa
aaaaatttagttgtggaagtgttcaataatgccattgacagtttgtcggacagtgacaag
aaattgccacaggttgaaaatgtacttcctttacttaaaaagggaattggaatccatcat
ggtggtttacttcctcttttgaaggagaccattgagatactttttgctgaaggtctcatc
aaggctctgtttgctacagaaacatttgccatgggtcttaatatgcctgccaggacagtt
ttattcacctctgctcgtaagtttgatggtaaagattttagatggataacatctggtgaa
tatattcaaatgagtggtcgtgctggacgtcgtggaattgatgaccgtggtattgtcatc
ttgatggttgatgagaaaatgagtcctatggctgctaaaaatattgttcaaggagaagct
gatcccttgaatagtgcctttcatctaacgtacaacatggtcctgaatttgttgagagtc
gaagaaattaatcctgaatatatgttggaacgatccttctaccagttccaaaactatgcc
accataccacaacttcttgaaaatattcggaaacgagaaaaagatcacactaacctgaaa
attccaaatgaagagcagatagcaacttactataagattaggcagcagcttgatgccctt
gctgttgagttccaaggatatatcacaaaaccacaaaacatattgcagtttttacagcca
ggccgtttgattaaagtaaagaatactgatgatgattttggttggggagttgttgtcaat
gtccagaaaaaggctgatcaaagcaagttggaatcagatgttcagtacgtttgtgaagtc
cttctccatttaagtccagaatctgctcatactcatagcagcttatccattaaaccatgt
cctcctggacagaaaggagagatgcaggttgtacctattctcattcatttgatatcttca
ataagttccgtacgcttatatgttcctaaagacttgcggtcactggacagcaggcagagc
atcctaaaatcagttcaggtactccacatttcatatttttgtccctttcagaaaattgaa
gcttttgaacaccgtatgtattcccatcctcttcataaagacccaaaactggaagaatat
tattcactgtatgaaagaaaagctaagcttggacaagaaattaaaaaaatcaaacttgaa
atgaagaaaaagaagtcattactgcaaatggatgagttgaaatgccggaaacgtgtgttg
aggcgacttggttatgcaacaccttcagatgttattgaaatgaaaggcagagttgcttgt
gaaattgacagtggtcaagaacttcttcttactgagttgattttccatggagttttcact
gacctcactgtccaacagagttgtgccctcctcagttgttttgtctgccaagaaaaagca
tcagaaactcccaaattgacagaaacacttcgtgggccattaagaatcatgcaggaaact
gccagaagaattgcccgagtgagcaaagaagccaagatagagatggatgaagaaacttat
gttgattctttcaaaccccatatgatggatgttgtgaatgcttggtgcaatggtgctgag
tttgctcaaatttgtaaaatgactgatatatttgaaggaagtgttataagaatcatgcgg
cgattagaggaaatgttgagacaaatgtgtcaagcatcaaaagctattggaaatacagaa
cttgaaagtaaattttcagaagggatcaggaaaataaaaagagatattgtatttgcagcc
agtttgtacctatag
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