Octopus bimaculoides (California two-spot octopus): 106882355
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Entry
106882355 CDS
T04127
Name
(RefSeq) cleavage stimulation factor subunit 1 isoform X2
KO
K14406
cleavage stimulation factor subunit 1
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106882355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106882355
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106882355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
CSTF1_dimer
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_SPT8
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
VPS8_N
Beta-prop_HPS5
PROPPIN
B-prop_COPA_B_2nd
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
106882355
NCBI-ProteinID:
XP_014788494
UniProt:
A0A0L8FNF5
LinkDB
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Position
26:11344274..11403776
Genome browser
AA seq
429 aa
AA seq
DB search
MGDIEAKVRENLYRLIVSQLFYDGHQTIASSLATTVRCYPACPPSDRLMKLLQIGLKTEE
AQNPQQQVPTEAVTPGTGIDLEYETDVQTISPEAALYETCYVTAHKAACRAGAFHHSGQL
IATGSEDASIKILDVERMLAKSATPAEIIAMETPQQTMENHPVIRTLYDHNSEVTSLDFH
PFHQILVSGSKDFSVKFFEFSKPSVKKAYKSIQESAPVRCLSFHPSGEYILVGTQHPVLR
LYDVNTFQCFVSGNPADQHVGPVTSVRWSPNAHLYVTSSKDGDLKLWDGVSNKCINTFKH
AHEGQEVCSAVFSRNSKYILSSGKDSLVRLWELSTNRCLIIYTGAGATGKMEHRSQTVFN
HTEDYVLFPDEKTTSLCCWDSRNAERQRLLSLGHNNVVRTIVHSPTGPAFLTCSDDFRAR
FWYRKANSD
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatatagaagcgaaagttcgtgaaaatttataccggctgattgtcagccagctg
ttttatgatggtcatcaaacaattgcatccagccttgctacgactgtccgatgttatcca
gcctgtccaccctcggaccgtttgatgaaattattacagattggacttaaaactgaagaa
gcccagaacccacagcagcaggttcccacagaagctgtcacacctggcactggtatagac
ctggaatatgaaacagatgttcagaccatctctcctgaagctgctctctatgagacttgt
tatgtcaccgctcacaaggctgcatgccgtgcaggtgctttccaccattctggtcaactg
atagccacaggatcagaggatgcttccattaagattttggatgtggagaggatgctggcc
aaaagtgctacacctgctgagatcattgctatggaaacaccacaacaaaccatggaaaac
catcccgtgattcgaacactctacgaccataactctgaagtgacgtcccttgactttcat
ccattccatcagatcctcgtctctggcagcaaagatttcagtgtgaaattctttgaattt
tcgaaaccctcagtgaaaaaagcttacaagagtatccaggaatcagccccagttcgatgt
ttgtcattccacccgtctggagagtatatattggttggaacacaacatcctgtgctacga
ctgtatgatgtcaatacattccagtgtttcgtctcaggcaatccagctgaccaacatgtt
ggaccagtaacatcggtgagatggagtcccaacgctcacctgtatgtgaccagttctaaa
gatggggacctcaaactgtgggatggtgtcagtaataaatgcatcaacacattcaaacat
gcccatgaggggcaggaagtctgttcggctgtgttctccaggaattctaagtatatcttg
tcaagtggtaaagattccttggtccggctgtgggaattgtctacgaatcgatgcctcatc
atttacactggagctggtgccaccggtaagatggagcatcgaagtcagacagtttttaat
cacacagaagactacgtgttattcccagatgaaaaaacaaccagtttgtgttgttgggac
tcgcgtaatgctgagcggcaacgcttgttatctctaggtcacaacaatgttgtacgaact
atcgtccattctccaactggtccagctttcttgacctgtagtgatgacttccgagctagg
ttctggtaccgaaaggcaaacagtgactga
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