Octopus bimaculoides (California two-spot octopus): 106883031
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Entry
106883031 CDS
T04127
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106883031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106883031
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106883031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WDR55
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR11_2nd
PEP5_VPS11_N
Beta-prop_SPT8
Beta-prop_DCAF12
PROPPIN
YARHG
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
106883031
NCBI-ProteinID:
XP_014789375
UniProt:
A0A0L8FJU8
LinkDB
All DBs
Position
26:16894766..16955005
Genome browser
AA seq
725 aa
AA seq
DB search
MMMPVSLPPMTGPPPQLPNMNHPPPNMPPRFNMPPPMAMSQGPGIMLPQGSQQQQQQQQQ
QQQQLQQRSYMQQKMMASQGIMFDGKRMRKAVHRKTVDYNSAVVKYLENRLYQRDHRDFR
AIQPDCLYQEGLVPPLSMLHNPMNCVVTKFVRTSTNKFRCPIFVLTWTPEGRRLVTGASS
GEFTLWNGLTFNFETILQAHDTSVRAMVWSHSDTWMVTADHAGYIKYWQSNMNNVKMFQG
HKEPVRGISFCPTDVKFTTCSDDGTVRIWDFQRCHEEKILRGHGADVKCVDWHPQKALIA
SGSKDNQQPIKLWDPKTSQSLATIHAHKSTVMELKWNRNGNWLLTASRDHLLKLFDIRNM
KEEMQTFRGHKKEATAAAWHPIHEGLFCSGGSDGTIMFWQVGIDKEVGGMEEAHEGMVWS
LAWHPMGHILASGSNDHTTKFWTRNRPGDKMRDRYNLNTLPLGMDQEAADCDYEQITTHL
PGMGLEQFPEKEQKMKELSSLSCGSGSDNDLPAIPGLDWVADEQYLKQQNEQRIPRKRVP
YARPVPKNFEQAWLGQKPTGVAGTDGNQQKPPAQKDDSTTPAANLPPQSRDGVTPANQPQ
TTPHAAANQTVSAPPQPGKMLGNQLSLPPNMPPPPQMQGGPMNMNAPPPPLPMGGQVMHP
MAQGPQSIQPPGMIGPPNMTGMPQGSRPPVHNPMNIRGPTMQQPPPPHGQAGPMVAPNQM
PMIRQ
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgcctgtgtcattgccgcctatgacagggccgcctccacaactccccaatatg
aaccaccctccacccaacatgcctcctcgattcaatatgccacctcccatggccatgtct
caaggacctggcatcatgcttcctcaaggttcccagcaacaacaacagcagcagcaacaa
caacaacagcaattacaacagcgtagctacatgcaacagaaaatgatggccagccaaggg
attatgtttgatggcaaacggatgaggaaagctgtccacagaaaaactgtggattataat
tcagctgttgtgaagtatcttgagaatcgactctatcaaagggaccaccgtgacttccga
gccattcaaccagactgcctttaccaagaagggcttgtaccacctctcagtatgttacat
aatccaatgaactgtgtggtcaccaaatttgtccgtacctcaaccaacaaattcagatgt
ccaatctttgtcttaacgtggacacctgaaggaaggcgtttagtaactggtgcttccagt
ggggagttcactctgtggaatggtcttactttcaattttgaaaccatccttcaggcacat
gatacatcagtgcgtgccatggtgtggagtcacagcgacacttggatggttactgcagat
catgctggttatataaagtactggcaatctaacatgaataatgtaaagatgtttcagggc
cataaggaaccagttcgaggtatcagtttttgcccaacagatgtgaagttcaccacatgc
tctgatgatggcactgttcggatctgggacttccagagatgtcatgaagaaaaaattctg
agaggtcatggagctgatgtcaaatgtgttgattggcatccacagaaggcactcattgct
tctggcagtaaagacaaccaacaacccattaaactgtgggaccctaagacatcgcagtct
ttagctacaatccatgctcacaagagtactgtgatggaattgaaatggaacagaaatggt
aactggctattgacagcatcgagggaccatttgttgaagttgtttgatattcgcaacatg
aaagaagaaatgcagacattcaggggccacaaaaaggaagcaactgctgctgcttggcac
ccaattcatgagggactgttctgcagtggaggatcagatggaaccattatgttctggcaa
gtaggaattgacaaagaagtaggtggaatggaagaagcccatgaagggatggtatggagt
ctggcatggcatcctatgggacacattttagcatctggttccaatgaccacaccacgaaa
ttctggacacgtaaccggcccggtgataaaatgagagatcggtacaatttgaacacacta
cctctaggaatggatcaagaggctgctgattgtgattacgaacagataaccacacatcta
cctggaatgggtcttgaacaatttccagagaaagaacagaaaatgaaagagctatctagt
ttaagttgtggtagtggcagtgacaatgatcttcctgcaattcctggactggattgggtt
gcagatgaacagtacttaaagcaacaaaatgaacagaggatacctcgcaaaagggtacca
tatgctcggcctgtgccgaagaactttgagcaggcttggctcgggcagaaaccaaccgga
gtggcaggtactgatgggaaccaacaaaaacctcctgcacagaaagacgatagtacaacg
ccagcagccaaccttccacctcagtctagagatggtgtgaccccagctaatcaaccacag
actaccccacatgctgctgctaatcagacagtctctgctcctccacagccaggaaagatg
cttggcaatcaactcagtctgcccccaaatatgcccccacctccccaaatgcaaggaggc
ccaatgaacatgaatgcacctccacctcctcttccaatgggtggtcaggtgatgcaccct
atggctcaaggacctcagtctatacaaccaccaggcatgataggccctccgaatatgact
ggtatgcctcagggatcacgtcctccggtacataatccaatgaatatacgaggtccaacc
atgcagcagcctccacctccacacggacaagctggccccatggtagccccaaaccagatg
cctatgatacgacag
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