Octopus bimaculoides (California two-spot octopus): 106883714
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Entry
106883714 CDS
T04127
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106883714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106883714
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
106883714
mRNA cycle factors
Common to processing body (P body) and stress granule
106883714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
106883714
NCBI-ProteinID:
XP_014790347
LinkDB
All DBs
Position
22:3541758..3610517
Genome browser
AA seq
1083 aa
AA seq
DB search
MSTAPQVLRQAEALKATVADPSKNVSEVWVSRQKLEDLYKKLLIMDLEYALDKKVEQDLW
NHAFKNQINTLQTQAKDNQNPKRLEVQASLNLFLETASGFYLQLLQLLCTTFKLDLPFRR
KSSAYGIIKEKNPLKAKITPPKKNSCFYICQHCLVHLGDIARYRQEVDQAQTYYWHAANL
VPSNGQPYNQLAILEAARGNKLTTVFYYIRSLAVRHPFPVAATNLEKFYSKLAKDSTDFK
GKLSMSELIAAFLQFHALIHLKADYERAACLSEKLLTSLPAHVTSQSFSTPMLIQIIAIN
LFTMHHAKRQMNDGFFDSNSQPDKQEEESKVEEKGFDMAFNFTVLLLDILLHYTPKQEQK
LRDFFTLPAIKILLDWLWSDPVYFSNNFLKSSSVWSNLSKLLNMVQEQPVNGECLDLSQY
FDVPLPEDYDLRCFQPIEKAHSNYSFDAETVPTEIEIQLRALRLINHGKWIVEKCSDLRL
LSMQVNKSGRLHFQFPGGQQPVTQYRTLYINTADGKENKGDIGHCNVDKQSSRQNVAIQA
IIQKQNQITDKNSPDKEVKNINKQLMKIPTDNQSKGCNINPHRYLLGVPTTDPQFMKPGG
NRPVSIAPTPQSVSKANVAPHPTAPSPLPLDLLPPSPTPNSVNTNQFSSSLQYRGPSPSF
PSHIALSSANVRLQQQQQLQQQQQQQQQQQLHSQQAPQQSYPSVNQTQFPRRGPFLPHQT
SQSFLPPSSKFPAAVPTQSANSGGPLSNHQFLNFTNQPSPPGPPAPPHYPQAFGPSAGET
LKGQKSSSSMQCQKSTPSPIGGPLSGPQQNPSPQQQQGLGQSAAASAAAQSQVHPDTLNK
SLLNSLSQSLALSLAEGCSPTEDMEHSELQQPCDDFTTDPSDILGGFSHLVAIQPPKPSQ
LDFLASSKPFQGHAEGVPKPDSPLAASEKSLLGTEGECLSGPSHEMNSQPGTYSLFSSSP
WSVHITAAGDSKSLGSSPFSSQASSIRNSPDPLSETYCTESSMVTPTFASGFGFSFSSAN
DHWGSSPPAPAPLQSTPPNAAAAAPPPPVPTGPPGGATSSYLFQGNLQFSDLSICITIDI
SVD
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgctcctcaagtcctcagacaagcagaagctttgaaggcaactgtggctgat
cctagcaagaatgtgtctgaagtttgggtatcacgtcaaaagctggaggatctttacaag
aagctgctgataatggatttagaatatgctttggacaagaaagtggaacaagacctgtgg
aaccatgctttcaaaaatcaaattaacacccttcaaactcaagctaaggacaatcagaat
ccaaaaagactcgaagtgcaagccagcctcaatctgttccttgaaacagcaagtgggttc
taccttcagttattacagctactatgtacgaccttcaagttggacctgcctttcaggcgg
aaatcttcagcttatggaattataaaagagaaaaatcctttaaaagcgaaaatcactcct
cccaaaaagaactcctgtttctacatctgtcagcattgccttgttcatttgggagatatc
gctcgttaccgccaagaagtggatcaagcacaaacgtattactggcatgctgctaatttg
gtaccatcaaatggtcaaccctacaaccagctggccatacttgaggcagcccgtggtaac
aagctgaccacagtgttttattacatccgcagtttagcagtgaggcaccccttccctgtg
gctgctaccaaccttgagaagttctacagcaaacttgccaaagactcgactgacttcaaa
ggcaagctgtcgatgagtgagcttattgcggcctttctacagttccacgccctcatacac
ctcaaagctgactatgaacgtgctgcttgtctctctgagaagttactcaccagcctccca
gctcacgtgacctcacaaagtttctccactcccatgctcattcaaattattgccatcaac
ctgtttactatgcaccacgccaaacgacaaatgaacgatggtttcttcgactccaacagc
caacctgacaagcaggaagaggaaagtaaagtggaggagaagggatttgatatggcgttc
aattttacagttttacttctggacatattgctacattatactcccaagcaagaacagaaa
cttcgagattttttcactttacctgctatcaagatacttttggactggttgtggtcagat
ccagtttatttcagtaataatttcctgaaatcttcgagtgtctggtcaaatttgtctaaa
ttgctgaacatggtacaagaacaaccagtgaacggagaatgtcttgacctctcacaatat
tttgatgtccccttacctgaagattatgatctaaggtgctttcaaccaattgaaaaagca
cacagtaattacagctttgatgccgaaactgttccgaccgagatagaaatacaactccga
gctttacgcttgattaatcatggcaaatggattgttgagaaatgttcagatctgcggctc
ttatcaatgcaagtgaacaagtctggccgactacactttcagttccctggaggtcagcaa
ccagtgacacagtacaggacattgtacatcaataccgctgatggcaaagaaaacaaaggt
gatattggtcattgtaatgttgacaaacagtcaagcagacaaaatgttgccatccaggca
attatccagaaacagaaccaaatcactgacaaaaactcacctgacaaagaagtcaaaaac
attaataagcaattgatgaaaattccaacggataaccagagcaaagggtgcaacataaac
cctcaccgttacttacttggtgttccgactaccgatccccagttcatgaaacctggtggc
aaccgcccagtctccatagctcccacgccgcagtccgtaagcaaggccaatgttgcccca
cacccgacagctccctcccctctacctctggatcttctgcccccatctcccaccccgaac
agcgtcaacacgaaccagttttcttcatcacttcagtatagaggcccgagtccatcattt
ccttcccacattgctttgtcctcggcaaacgttcgactacagcaacagcagcaactgcag
cagcagcagcagcagcagcagcagcagcaactgcattctcagcaagctccgcagcaatcc
tacccttccgtcaaccagactcagtttccgagaagaggtcctttcctgccacatcaaaca
tctcagtcattcttgccgccatcatcaaagttccccgctgcagtccccactcagtctgca
aacagtgggggacccttgagtaatcaccagttcctgaattttacaaaccagccttcccca
cctgggccgcctgctcctcctcactacccacaggctttcggcccttcggctggcgaaacc
ctgaaagggcagaagtcgtctagcagtatgcaatgccagaagtcgacgccatcacccatt
gggggtccattgagtggaccccaacagaacccttctccacagcagcagcaaggtttgggg
caatcagcagcagcatcagcagcagcacagagtcaagtgcacccagacactctaaataag
tcattgctgaactcattgtcacaaagtttagccctatctctagccgagggttgttctccc
actgaggacatggaacatagcgagcttcaacaaccgtgtgatgacttcactacggatcct
tcagacatcttgggtggtttctctcatttagttgctattcagccacctaaacccagccag
cttgattttctagcttcttcgaaacccttccaaggacacgctgaaggagttccgaaacct
gacagtcccttagcagcatcagagaaaagtttacttggtactgaaggagaatgtctgtca
ggtcccagtcatgaaatgaactcacaacctggaacttactccctgtttagttcctcacct
tggtcagtccatatcactgctgccggagattctaagagtctgggatcatctccgttctca
tcgcaggcaagtagcatccgcaactcaccggacccgttatccgagacctactgcaccgaa
tccagcatggtgaccccaacttttgccagtggcttcggtttctccttttcatctgccaac
gaccactggggttcttcaccaccggccccggcacctcttcagtctactccacctaatgct
gctgctgctgctcccccccctccagtgcccacaggacctcctggaggagccacgtcgtca
tacttattccagggaaacctccaattcagtgatctatctatttgcataactattgatata
tctgtagattga
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