Octopus bimaculoides (California two-spot octopus): 106884475
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Entry
106884475 CDS
T04127
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106884475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106884475
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106884475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
106884475
NCBI-ProteinID:
XP_014791363
UniProt:
A0A0L8I2M4
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Position
12:complement(66141070..66143488)
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AA seq
278 aa
AA seq
DB search
MAEDFEATQPLEYLRKFLKNDVRPDGRELGESRSIIVNIGYISSADGSALVKTGDTAVIC
GIKVELAIPKCEEPDQGFIVPNLELSTLCSPNFRPGPPGDQAQRTSQMLFDIVKNSKCLD
LKELCITPGKLVWVLYCDMICLDYDGNVLDVALLSLMAALYNCQLPKVTVDEDSLEISVD
FDSRQPLNIHSHPVATTFSLMDGNILLMDPCIGEENLSDGTITICTCDQKLCGVFKPGGA
KISDEKLFQCISRAEEQGAKVQCLLQKALKSKTDNKTE
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggatttcgaagctactcaacctttggaatatctgaggaaatttctgaagaac
gatgtccgacctgatggcagagaactgggggagtcacgatccattattgttaatattggg
tacatctcttcagctgatggttctgcacttgtgaagactggagatactgccgtgatatgt
ggtattaaagtggaactggcaataccaaaatgtgaagaaccagaccaaggtttcattgta
cctaatttggaactgtctactctatgttcacccaatttccgaccaggacctccaggggat
caggcacaacgcacaagccagatgctttttgatatagtaaagaattcaaaatgtttagat
ctgaaggagctgtgtatcacccctgggaagttagtttgggtgttgtattgtgacatgatc
tgtcttgattatgatggtaacgtattagatgtagcactcctgtctctgatggcagctctt
tacaattgtcaattaccaaaagtgactgtggatgaagattcccttgaaataagtgttgat
tttgacagcaggcagcccctcaacatccactctcatcctgtagcaacaacatttagttta
atggatggtaacattctcctgatggacccctgtattggagaagagaatctctctgatggc
accattacaatctgcacttgtgatcagaaactgtgtggtgtgtttaagccaggtggagcg
aaaatatctgatgagaaattatttcaatgtatttctcgtgcagaggagcaaggtgccaag
gtacaatgtttgttacagaaagccttaaagagtaagacagacaataaaacagaatga
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