Ooceraea biroi (clonal raider ant): 105274674
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Entry
105274674 CDS
T05778
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105274674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obo03041
]
105274674
Spliceosome [BR:
obo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105274674
Complex C
U5 SnRNP specific factors
105274674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
DUF4964
Motif
Other DBs
NCBI-GeneID:
105274674
NCBI-ProteinID:
XP_011329288
LinkDB
All DBs
Position
11:complement(585774..595044)
Genome browser
AA seq
2372 aa
AA seq
DB search
MSIPPYLLGQMHGPNAWAMMAQQQLVAAQHAQAAAHAQAAHHAHMQAIAGPPLPQMPKQP
EILSEDKLQEKAQKWQQLQSKRFAEKRKFGFVDAQKEDMPAEHIRKIIRDHGDMSSRKYR
HDKRVYLGALKYMPHAVMKLLENMPMPWEQIRDVKVLYHITGAITFVNEIPWVIEPVFIA
QWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVEPLEAIQIELDSEEDES
VASWFYEHKPLVGTVHINGSTYRRWNLTLPQMATLYRLANQLLTDLVDQNFFYLFDPKSF
FTAKALNMAIPGGPKFEPLVKDSNAADEDWNEFNDINKIIIRQPIRTEYRIAFPYLYNNM
PHFVHLSWYHAPNVVYIKTEDPDLPAFYFDPLINPISHRNSLKTMEPQIEDDEDFILPGE
VQPFLQETPLYTDNTANGIALLWAPRPFNTRSGRTRRAIDIPLVKSWYREHCPPGQPVKV
RVSYQKLLKYFVLNALKHRPPKPQKKRYLFRSFKSTKFFQTTTIDWVEAGLQVCRQGYNM
LNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIIDSHVQ
YRLNNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGK
GPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDL
ELRASVMHDIVDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILRYV
KMKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISP
EEAVAIFTTSVHWLESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREE
LGLIEQAYDNPHEALSRIKRHLLTQRAFKEVSIEFMDLYSHLIPVYDVEPLEKITDAYLD
QYLWYEADKRRLFPPWVKPADTEPPPLLVYKWCQGINNLQDVWDVGEGECNVLLESKFEK
LYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIAQY
YGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDVASETAHPIRLYCRYVDRIHLFLRFSA
DEAKDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPR
STTTIQWENSFVSVYSKDNPNLLFNMSGFECRILPKCRTTHEEFTHRDGVWNLQNEITKE
RTAQCFLRVDDESLQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQE
LLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWS
KQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRL
TLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGK
LWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQR
SGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQ
KVHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFSAYKWNVSRPS
LLADSKDVMDNTTTQKYWIDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLI
AIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEPYL
SSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIH
TSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIV
IKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL
HVNTERTKVVLKPDKTTITEPHHIWPSLMDDEWIKVEVQLKDLILADYGKKNNVNVASLT
QSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITATTSNYE
TQTFSSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQ
IAGYLYGISPPDNPQVKEIRCIVMAPQWGTHQTVHLPNTLPNHQYLKEMEPLGWIHTQPN
ELPQLSPQDISTHARVMAENSIWDGEKTIVITCSFTPGSCSLTAYKLTPSGFEWGKQNTD
KGNNPKGYLPSHYEKVQMLLSDRFLGFFMVPSQGSWNYNFMGVRHDPNMKYELQLANPKE
FYHEVHRPAHFLNFSSLEDGEGVGADREDMFA
NT seq
7119 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattccaccatatttgctgggccaaatgcatgggccaaatgcatgggcaatgatg
gcccagcaacagttggtcgctgcccagcatgctcaggctgcagctcacgcacaagctgct
catcatgctcatatgcaagctatagccggaccaccattaccgcagatgcccaaacaacca
gaaattttatctgaggacaaacttcaggaaaaagcgcaaaaatggcagcagttgcagtcc
aagcgatttgcagagaagagaaagtttggctttgtggatgctcagaaggaggacatgcca
gctgagcatataagaaagatcattagagatcatggcgatatgagcagccgaaagtatcgg
catgataagcgtgtttacttaggggcattaaagtacatgccacacgccgttatgaagctt
ttggagaatatgcctatgccatgggaacagataagggatgtgaaagtcttgtatcatatt
acaggagctattacattcgtcaatgaaattccttgggttatagaacccgtgttcatagct
cagtggggcactatgtggattatgatgagacgagagaaaagggatcgcagacacttcaag
agaatgcggtttccaccgttcgatgatgaggaaccacctctagattacgcagataacgtt
ttagatgttgaacctttggaagctatacagatcgaacttgactcggaagaagatgaatct
gttgcatcatggttttatgagcataaaccgttagttggaacagtacacattaacggatct
acttatcggagatggaacctgacgttaccacaaatggctaccttgtatcgtttggccaat
caattgttgaccgatttggtagatcaaaacttcttctatttgttcgatccgaagtcattt
tttaccgccaaagcattaaatatggcgattcctggagggccgaaatttgaaccgttggta
aaggattcaaatgccgctgacgaagattggaacgaattcaatgatataaataagatcatt
attagacaacctatcaggacagaatacaggatcgcgttcccctatttatacaacaacatg
cctcattttgtgcatctttcatggtatcacgcaccgaatgttgtgtacataaagactgag
gatccggatttacctgcattttacttcgatcctctaattaatccaatttctcatagaaac
tcattgaagacaatggaaccgcaaattgaagatgatgaagattttattttaccaggcgag
gtgcaacctttcttgcaagagactcctctttatactgataatacagctaatggaatagct
cttttatgggcacctagaccgttcaacacacgctctggtagaacaagaagggccattgat
atcccattagtcaagtcgtggtacagagagcactgtccacctggtcaacctgtaaaagta
cgagtcagttatcagaaattgctgaaatactttgtgctgaatgctttgaagcacaggcca
ccgaaaccgcaaaagaagcgctacctgtttcgctccttcaagtcgaccaagttctttcaa
acgacgacgatagattgggtggaagccggtttgcaggtgtgtcgccagggatacaatatg
ttgaatctgctgatacaccgcaaaaatctcaattatcttcatttggattacaatttcaac
ttgaaacctgtgaaaacgcttacaacgaaggaaaggaaaaagtcacggttcggtaacgcg
tttcatctgtgccgagagattcttcgtttgactaaactcattatcgattctcacgttcag
tatcgcctgaataacgtggacgcgttccagctcgctgacggattgcaatacatcttcgca
cacgtcggccaattgaccggcatgtaccgatataaatataaattgatgcgacagattagg
atgtgcaaggacttgaagcacctgatctattaccgtttcaataccggaccggtcggtaag
ggacccgggtgcggattctgggcgcccggctggcgcgtctggttattcttcatgagaggc
attacaccgctgttggagagatggttgggtaatctgttatcgagacagtttgaaggtcgt
cactcaaagggtgtggcgaaaactgtaacgaagcaacgagtggaatcgcactttgatctt
gagctgcgcgcatctgttatgcacgatatcgtggacatgatgccagaggggataaaacag
aacaaggcacgtacgatccttcagcatctgagtgaggcctggcgctgttggaaagctaac
ataccatggaaagtaccagggctgccgattccaatcgaaaacatgatactgcgttatgtc
aagatgaaggctgactggtggacaaatacggctcattataaccgagagaggattcgacgc
ggcgccacggtggacaaaactgtgtgcaaaaagaatctcggtcgtttaacacgtttgtac
ttgaaagctgaacaggagaggcagcacaattatctgaaggatggtccgtacatatcaccg
gaggaagccgtagctatatttacaacttcggtgcattggttagaatcgcgaagatttgca
ccaataccctttccacccttgtcctacaaacacgacacaaagttacttatattagccttg
gaacgtttaaaagaagcctatagcgttaaatccagattaaatcagagccaacgagaggaa
ttgggcttgatagagcaagcgtatgacaatccgcacgaagcgctatccaggattaagcga
catttgcttacgcagagagctttcaaggaagttagtatcgagttcatggatctctatagc
cacctgattcccgtatacgacgtagaaccactcgagaagatcacggacgcctacttggat
cagtatttatggtacgaagcggataagaggcgattattcccgccatgggtgaagccggcc
gatacagaaccgccgccgcttctggtctacaagtggtgtcagggtatcaacaatcttcaa
gacgtgtgggacgtaggcgagggtgaatgtaacgtgctactcgaatcgaaatttgaaaaa
ttatacgagaaaatcgatctcacgttgctcaacagattactacgtttaatagttgatcat
aacatcgctgattacatgacggcaaagaacaacgtcgtcatcaattacaaggatatgaat
cacacgaacagctacggcattatcagaggcttacaatttgcatcttttatcgcacaatat
tacggattagtgttggatctgctggttctaggtcttcaacgagctagcgagatggccggt
ccgccgcaaatgccgaacgattttctgaccttccaagatgttgcttccgaaacggcacat
cctattcgattgtactgccgctacgtcgacagaatacacttgtttctacgtttctccgct
gacgaggcgaaagatcttatccaacgttaccttacggaacatcctgatccaaataacgag
aatattgtcggctacaataacaagaagtgttggccacgggacgctcgtatgagattgatg
aaacacgacgttaatttgggtcgcgccgtcttctgggacatcaagaatcgcctgccgcgc
tccactactaccatccagtgggagaacagctttgtcagtgtctacagcaaagataatccc
aatttattatttaacatgagtggtttcgaatgtaggattttacccaaatgtagaactacc
cacgaggagtttacacaccgagatggcgtctggaatctgcaaaatgagataacaaaggaa
agaacggcgcaatgcttcttacgcgtcgatgatgaaagtttgcagcgcttccacaatcgg
gtcaggcaaattctcatggcttcaggttcaaccacgtttacgaagattgtgaacaagtgg
aataccgcgctgatcggtctgatgacttatttcagagaggccgtagtgaacacgcaagag
ttgctagacctgttggtgaagtgcgagaacaagattcaaacacgtatcaaaattggtttg
aattctaagatgccctcacgtttcccacccgttgttttttatacgccgaaggagctaggt
ggtctgggaatgttatcgatgggtcacgtactgataccgcaatctgacttgagatggtct
aaacaaaccgacgtaggtatcactcacttccgttcgggtatgagtcacgatgaagatcaa
ctgattccaaatttataccgttatatacaaccctgggaatcagaatttattgattctcaa
cgcgtttgggctgagtatgctttgaaacgacaagaggctaatgctcagaatcgcagactc
actctagaagacctggaagatagctgggatcgcggtattcccagaataaacacgctattt
cagaaagacaggcatacgttggcttacgataaaggctggcgcattcgcacggaattcaaa
caatatcaagtgttgaagcagaatccgttctggtggactcatcaacgccacgatggcaaa
ttgtggaaccttaacaactatcgaaccgacatgattcaggcacttggtggtgttgaaggc
attctcgaacatactcttttcaaaggtacttacttcccaacatgggaaggtctcttttgg
gagaaagcgtccggcttcgaggaatctatgaaatataaaaagctgacgaatgcgcaacgc
tctggtctcaatcaaattcctaatcgtcggttcactttgtggtggtcaccgactatcaac
cgtgcgaatgtctacgttggtttccaagtacagctcgatttaacgggaatatttatgcac
ggtaaaatacctaccttgaagatctcgctgattcaaatattccgtgctcacttgtggcag
aaagtgcatgaatctattgtaatggatctctgtcaggtattcgatcaagaactggacgcg
ctggaaatcgagactgtgcaaaaggaaacgatacatccgcgaaagtcctacaagatgaac
tcctcatgcgctgacattctgctattttctgcctataaatggaacgtgtcccgaccatcg
ctccttgctgattccaaggacgtaatggacaatacgactacacaaaaatattggatcgac
gttcaattgagatggggcgattatgattcgcacgatattgaacgatatgctcgcgccaag
ttcttggattacaccactgacaacatgtcgatttatccatcgcccactggtctcttgata
gctatcgatttagcgtataatctgcatagtgcttatggcaactggttccctggctgtaag
ccgctcatacagcaagccatggcgaagatcatgaaagcaaatcccgccttgtacgtgtta
cgcgaacgtattcgcaaagcattgcagctgtactcgtccgaacccacggaaccttatctc
tcctcacagaattacggtgaactcttttccaatcagataatatggtttgtcgatgataca
aacgtatatcgcgtgactattcacaaaaccttcgagggcaatttgacgacgaagccaatc
aatggagcaatctttatcttcaacccacgcacgggacaacttttcctgaagatcattcat
acctctgtgtgggcgggtcagaagcgtcttggccagttggccaaatggaaaaccgccgaa
gaagtcgctgcgttaattcgttctctaccagtggaggaacaaccgaaacagattatcgtc
actagaaagggcatgttggatccattggaagtgcacttactggacttccctaacatagtc
atcaagggatctgaattgcagttaccatttcaggcgtgtcttaaagtggagaagttcggc
gatctgatattaaaagcgaccgagccgcagatggtactgttcaatctttatgacgattgg
ttgaagactatctcgtcttacactgcattctcgcgattgatattaattctacgcgctcta
cacgtcaataccgagagaacaaaagtcgttttgaagcctgataagacgactatcaccgag
ccgcatcatatatggccatcgttgatggatgatgaatggatcaaggtggaagtgcagctg
aaagatttaatcttggcggattacggcaagaagaacaatgtcaatgtcgcgtcgctcacg
caatctgagattcgtgatatcattcttggtatggaaatcagtgctccgtccgcccaacgt
caacagattgccgagatcgagaagcagaccaaggaacagagccaactcactgctacgacc
acgcgaacagtgaacaaacacggcgatgagattattaccgcaaccacgtccaattacgag
acgcaaactttcagctcgaaaactgagtggcgagtacgcgctatttctgcaacgaatctc
catctcagaacgaatcacatctatgtctcttctgatgatatcaaggaaaccggttatact
tacatcttaccgaagaatgtgctgaaaaagtttgtcacgatttctgatttacgagcgcaa
atcgccggctacctgtatggtattagtccacccgataatcctcaggtgaaagaaatcagg
tgtatcgtgatggcgccacaatggggaacacatcagactgtgcatttaccgaatacatta
ccaaatcatcaatatttaaaggagatggagccgttgggatggatacacacacagcccaat
gagcttccgcagctctcgccgcaagacatatccactcacgcgcgagttatggcggagaat
tccatctgggatggcgagaaaaccatcgtcatcacttgcagttttacgcctggttcctgt
tccctcacggcgtacaaacttacaccaagcggtttcgaatggggcaaacaaaacactgac
aagggtaacaatccgaagggttatctacccagtcactatgaaaaggtacaaatgcttctg
tccgaccgtttcctcggtttcttcatggtgcccagtcaaggctcgtggaactacaatttt
atgggcgtgaggcacgaccccaacatgaagtacgagctacaattagcaaatccaaaagag
ttttatcatgaagtacacaggccggcccatttcctcaatttttcgagtttggaagatggc
gagggtgttggagctgatcgggaggacatgtttgcgtaa
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integrated database retrieval system
