Ooceraea biroi (clonal raider ant): 105277273
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Entry
105277273 CDS
T05778
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105277273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obo03041
]
105277273
Enzymes [BR:
obo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105277273
Spliceosome [BR:
obo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105277273
Complex B
105277273
Complex C
U2 SnRNP specific factors
105277273
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
MscL
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105277273
NCBI-ProteinID:
XP_011333820
LinkDB
All DBs
Position
10:complement(5453723..5457433)
Genome browser
AA seq
769 aa
AA seq
DB search
MSYHRGGSNKPKGFGFAGFQMSGKRSGTNIPPPPPNSTLSKQGYHTMNAITENALSACWG
VPKKRSKTEEEYFEDDDEPPTSSLEYIPAPGSPTYDLMKKSTAKDESDSEEDTLDAFMAS
IDAEVKRNKCVAQHDENRKEDKSKGFRADIDGEDDEESYYRYMEENPTAGLQQEESDQEI
EYDEDGNPIAPPKKKEIDPLPPIDHSEIKYEPFEKNFYNVHEEIASLSKQQIDDLKKTLG
IKVSGPSPPNPITSFGHFGFDDALIKAIRKNEYTQPTPIQAQAIPAALSGRDIIGIAKTG
SGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCC
YGGGSKWEQSKALESGAEIVVATPGRMIDLVKMKATSLSRVTFLVLDEADRMFDMGFEPQ
VRSICNHVRPDRQTLLFSATFKKKVEKLARDVLTDPIRIVQGDVGEANTDVTQHVVMFHN
NPSGKWNWLLQNLVEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNK
VITAFKKKDVSTLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTAY
TLVTEKDKEFAGHLVRNLEGANQEVPKSLIDLAMQSAWFRKSRFKGGKGKSLNIGGAGLG
FRGRPESSNSSGSSSQTSKDISEVVKKLERQGPGSDRLSAMKAAFRSQYNSQFRASSDHT
WEQTITPPSVIMPPPPPPTVPPPKPAAQDNQASNSAAPERKRVRKSRWE
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgagctatcatcgaggaggtagcaacaagccgaagggctttggatttgcaggctttcaa
atgtctggtaaaagaagcggcactaacatacctccgcctccaccaaattctacattgagt
aagcaaggctatcatacaatgaatgccattacggaaaacgctttgtctgcttgttggggc
gtgcctaagaagcgcagcaaaacggaagaagaatattttgaggacgacgacgaacctcca
acttcctcattggaatacatacctgcacctggttctcctacttatgacttgatgaagaaa
tcaactgcaaaagatgagagcgacagcgaggaggataccctggacgcattcatggcgagt
atcgatgcagaagtcaagcgaaataaatgtgtcgctcaacatgacgaaaatcgcaaggaa
gacaagtccaagggattccgagcggatattgatggggaagatgacgaagagagttactac
aggtacatggaggaaaatccaaccgctggtttgcagcaggaagaatcggatcaagaaatt
gaatacgacgaggacggcaatccaattgccccaccgaaaaagaaggagattgatccatta
ccaccgatcgatcacagcgagataaagtacgagccgttcgagaaaaacttctacaatgtg
cacgaggagatcgcgagtctaagtaagcagcagattgatgacctgaagaagaccctgggc
ataaaggtatccggaccgtccccgccaaatccgatcaccagtttcggccatttcggtttc
gatgatgcactgataaaggctatccgcaaaaatgagtacacgcaacccacgcctatacaa
gcgcaggcaatcccggctgctttaagtggacgggacataataggtatagcgaaaaccggt
agtggaaagacagcggcgttcatctggccgatgttggtgcatattatggaccaacgtgaa
ctaaaagccggagatggtcccatcggtcttatcctggcgcccactagggaattgtctcaa
cagatttatcaagaagcgaagaaattcggtaaggtttataacatccaagtgtgctgttgc
tacggaggtggcagcaaatgggagcagagcaaggcgttggaaagcggtgcggagatcgtg
gtcgctactcctggtagaatgatcgatttagttaagatgaaggcaacgagtctcagcagg
gtaacattcttggtcctcgacgaagctgacagaatgttcgacatgggatttgaaccgcaa
gtgcgatctatatgtaatcacgtgaggcctgaccgacagacgttgctgtttagcgcgacg
ttcaaaaagaaagtagagaagctcgccagggacgtgttaacggatcctatcaggatcgta
cagggagacgtcggcgaggctaataccgacgtgacgcaacacgtcgttatgttccataat
aatcctagcggcaagtggaactggctgttgcagaatttggtcgagtttctcagtgccggc
agcctcttgatctttgtcaccaagaagctgaacgcggaagaactcgccaacaatctcaaa
ctgaaagagtttgacgtgctacttctgcatggtgacatggatcagattgaaaggaacaaa
gtgatcaccgctttcaagaaaaaggatgtcagcactttggttgctactgacgtagccgcg
cgaggattggacattccacatatcaagacggtcgtgaattacgacgtagcgcgcgatatc
gatacgcatacgcacagaataggaagaacagggcgagccggtgagaaaggtacggcgtac
acccttgtaaccgaaaaagataaggaatttgccggacatttggtgaggaacttggagggg
gcgaatcaagaggtgccaaaaagcttgatagatttggccatgcaaagcgcgtggtttagg
aagtcgaggttcaaaggcgggaaaggaaagagtctgaatatcggcggggccggactcggc
ttccgaggcaggcccgagtcgtcaaactcgagcggatcctcgtcgcagacgtccaaggac
atcagcgaggtcgttaaaaagttggagagacaaggtcccggcagcgatcggctatctgcg
atgaaagccgctttccgaagtcaatataattcccagttccgagcatcatcggatcacacc
tgggagcaaacaatcacgccaccgtcggtgataatgccaccgccaccaccgccgaccgtt
ccgccaccgaagcctgcggcgcaggacaaccaggcctccaactcggcggcaccggagcgc
aaaagagtgcgaaagagtcggtgggaatga
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