Ooceraea biroi (clonal raider ant): 105277682
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Entry
105277682 CDS
T05778
Name
(RefSeq) exosome complex exonuclease RRP42
KO
K12589
exosome complex component RRP42
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105277682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obo03019
]
105277682
Messenger RNA biogenesis [BR:
obo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105277682
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
105277682
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
NDUF_B6
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
105277682
NCBI-ProteinID:
XP_026827057
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All DBs
Position
7:1919377..1923070
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AA seq
397 aa
AA seq
DB search
MSRVPDVIQNPAMDGDRPMSIERRMGRERERLIGMTDEERAWRKKWLDAQKLAPEEPVVP
KDYYKTLYNPLRRFYRAPMNKFQNALGPVVGQVGALVLRNIISKTVMGIIGVYCIYYHLK
YHRMLGLRNDGRSWCQYRSIELETGLMQPAHGSARLRIGNITDVLVSVKLEIDTPHAERP
EEGKLDFFVDCSANATPAFEGKGGDDLATEISYILSKAYQTPNVFDLRQLCIIPNKKCWK
LYVDVLILQYGGNLLDAVGAAVKAALYNTEIPKVIAATLDAGEPDIQVSDDPYDCIKLDV
TNYPVIITVCKIGDNFVVDPTLEETSCSVASLVMSVTPNGKVTSVVKLGSGSLLSNTLIK
MLQVGKDISLKLNETLMRELKEEDKLGRSKPVCGFLR
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgagtgccagatgtgatacaaaacccagccatggatggggataggcccatgtcc
atagagcgccgtatgggtcgcgaaagggagcgactaataggaatgacggatgaggagcga
gcatggaggaagaaatggctggacgctcagaagctggcacctgaggagccggtggttccg
aaggattattacaagacgttgtacaatccactcagacgattctacagggcacctatgaat
aaatttcagaatgcgttggggccggttgtgggacaggtaggtgcacttgtgctgcgaaac
ataataagcaaaactgtgatgggtatcattggagtgtattgtatctattatcatctcaag
tatcacagaatgcttggtctgaggaacgatggtcgatcttggtgtcagtaccgctcaatt
gagctcgagaccggactgatgcaacctgcgcatggctcagcgaggctacgtataggcaat
atcacggacgtactagtcagcgtgaagctggagatcgatacgccgcacgctgaaagacca
gaggaaggcaaactcgacttctttgtcgactgttctgccaatgctacaccagcatttgag
ggcaaaggcggggacgatctggcgaccgagataagttatattctttcaaaggcttaccag
acacccaacgtctttgacctgaggcagttgtgcataatacctaacaagaaatgttggaag
ctatacgtagacgttttgatccttcagtacggtggaaatttactcgacgcagtgggcgct
gcggtgaaggcagcattgtacaataccgagatcccgaaggtgattgcggcgacgctcgat
gccggcgagccagatattcaggtgtcggacgatccttatgactgcatcaaactggacgtc
acgaattatccggtgataataacagtgtgcaagattggggataacttcgtggtggatcca
acgttggaggaaacatcatgcagtgtcgctagtctcgttatgtctgtgacgccaaacggc
aaagtaacgtctgtagtcaagctgggatccggtagcttgctgtccaataccttaatcaag
atgttacaggtaggaaaggacattagcctcaaactgaatgagacgcttatgagagaattg
aaagaggaagataagctcggccgatcgaagcccgtttgtggctttctcagataa
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