Ooceraea biroi (clonal raider ant): 105278177
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Entry
105278177 CDS
T05778
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105278177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obo03019
]
105278177
03041 Spliceosome [BR:
obo03041
]
105278177
03009 Ribosome biogenesis [BR:
obo03009
]
105278177
03016 Transfer RNA biogenesis [BR:
obo03016
]
105278177
Enzymes [BR:
obo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105278177
Messenger RNA biogenesis [BR:
obo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105278177
Spliceosome [BR:
obo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105278177
Complex C
U4/U6.U5 tri-SnRNP related factors
105278177
Ribosome biogenesis [BR:
obo03009
]
Eukaryotic type
Pre-60S particles
Helicases
105278177
Transfer RNA biogenesis [BR:
obo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105278177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
105278177
NCBI-ProteinID:
XP_026831246
LinkDB
All DBs
Position
2:complement(17021941..17026808)
Genome browser
AA seq
1012 aa
AA seq
DB search
MANFGEDLFDVFDESNDDIEIPEIALKKIEPAEAGVKRQLDADDDKSLVVKKLRQESILD
DINLEEVACRITTHTIDGMESCTHEVAVPPDQEYIPLEHSQGKPAKEYKFILDPFQKEAI
LCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKYREFHEEFKD
VGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEE
TLILLPDNVHYVFLSATIPNARQFAEWVTHLHKQPCHVVTTDYRPTPLQHYIFPVGGDGI
HLVVDENGQFKEENFNRAMACLRNMGDAAKGDTKGRKGGLRASNSGQTNIFKMVKMIMER
NFAPVIIFSFSKKDCEVYAMQMAKLDLNTLEEKKLVDEVFNNAIDVLNDEDKKLPQVVNL
LPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKF
DGKDFRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPVVGKAIVQGKPDPINSAFH
LTYNMVLNLLRVEEINPEYMLERSFFQFQNQAGIPALYNKVQELQTSYNTVTVERYEEIS
SYHDIRQQLDRLSAEFRSFLTQPEYLVPFLQPGRLVKVKNENETFDWGIIVNFKKKNPKN
PAKEKTTIIIDVLLHISKDSKEGAPVPCREDEEGEVEVIPVVHNLISQISSLRIYYPKDL
RPSDNRKSVLKTIREVKKRFPKGPPLLNPITDMHIEDQAFKDIVKKIEALEERLYAHSLH
EDANVDTLYKQFLQKEELAAQLKQAKQEFKQAKSILQMDELKCRKRVLRRMAYCTVSDVI
ELKGRVACELNGADELLMTEMIFNGLFNALNVPQMVALISCFVCDEKSNEMPKSTEELSG
PLRQMQDLARRIAKVSTEANLELDEHVYVDKFKPFLMDVIYAWCKGATFLQICKMTDIFE
GSIIRCMRRLEEVLRQLCQAAKGIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattttggtgaagatttatttgacgttttcgatgagtcgaacgacgatatagaa
ataccggagatcgcgttaaagaaaattgaaccagcagaagcaggagtaaagcgacaactt
gacgcggacgatgacaaatcactcgtcgtcaaaaagttacgacaagagtcgattctggat
gacatcaacttggaggaggtagcatgtcgcataacaacacacactatagatgggatggaa
tcttgtacgcatgaagtcgccgtccctcctgatcaggaatacatacccttggagcatagc
cagggcaaaccggcgaaagaatataaatttatcctcgatccattccagaaagaggcgatc
ttatgtattgaaaacaatcagtcggtcctcgtttctgcacacacgtccgctggcaaaacc
gtcgtggctgagtatgcgatagcgtgttcgcttcgagacaagcagagggtaatatacacg
actccgatcaaagcactgagcaaccagaagtacagagaatttcacgaggagttcaaggac
gtcgggctggttacgggcgacgttaccatcaacccaacagccagcgtgttaattatgacc
accgagattttacgtaacatgctttacaggggttcagaggtgatgcgtgaggtcggttgg
gtgatatttgacgagatccattacatgcgcgataaagagaggggcgtggtgtgggaagag
acgcttatactcttgccggacaacgtacactacgtatttctttccgctacgataccgaac
gcgcgacaatttgccgagtgggtgacgcatttgcacaagcagccgtgtcacgtagtgact
accgattatagacccactccactgcagcattacatatttccggtcggtggcgatggcatt
catctggttgtagacgagaacggtcagttcaaggaggagaatttcaaccgcgcgatggcg
tgcctgcggaacatgggcgacgcggcgaagggggacacgaagggacgcaagggcggcctg
cgcgcgtcaaacagcgggcagacgaacatcttcaagatggtgaagatgatcatggagagg
aacttcgcgcccgtgataatcttcagtttctcgaagaaggactgcgaggtttacgcgatg
caaatggctaaactcgacctgaacacgctagaggagaagaagctggtggacgaggtgttc
aataacgcgatagacgttctcaacgacgaggacaagaagctgccgcaggtggtgaacctg
ttgccgctgctgcgacgcggaataggcatacatcacggcggcctgttgccgatcctgaag
gagacggtcgagatattgtttggcgagggcctgatcaaggcgctcttcgccaccgaaacg
ttcgcgatgggtctgaacatgccggcgcgaaccgtcctcttcaccgcaccccgtaaattc
gacggcaaggacttccgctggatcacgtcgggcgagtacattcagatgtccggtcgtgcc
ggcagaagaggtctcgacgacaaggggatcgtcatactgatgatagacgagcaagttagt
ccggtcgtcggcaaagccatcgtccaaggcaagccggatccgatcaattccgcgtttcac
ttgacctacaacatggtcctgaatctcctccgagtggaggagatcaatcccgagtacatg
ctggaaagaagcttcttccagtttcagaatcaggctggcatcccggctctctacaataag
gtacaggagctgcagacctcttacaacacggtgaccgtcgagaggtacgaggagatatcc
tcctaccatgacatacgtcagcagctcgatcggctgagcgcggaattccgatcgtttcta
acgcagccggagtacctggttccctttttgcagcctgggagactagtgaaagtgaaaaat
gagaacgagacgttcgactggggcatcatagtaaactttaagaaaaaaaatccgaagaat
ccggcgaaggagaagacgacgatcattatcgatgtgttgcttcacatatccaaggactcc
aaggagggcgcgccggtcccgtgtcgcgaggacgaggagggcgaggtcgaagtgattccc
gtggtgcacaatttaatttcgcagatcagctcgctcaggatatattacccgaaggacctc
aggccgtccgacaacagaaagagcgtactgaaaacgatacgagaagtgaagaaaaggttt
ccgaagggcccgccgttgctcaatcccatcacggatatgcacatagaggatcaggccttc
aaggacatcgtgaaaaaaattgaggcgttggaggagagactctacgcgcattccttgcac
gaggatgccaacgtagacacattgtacaagcaatttttgcaaaaggaagaactggctgcg
cagctcaagcaggcgaagcaggagttcaagcaggcgaaatcgatactccaaatggacgag
ctcaagtgcaggaaacgagttctgaggaggatggcgtactgcaccgtgtccgacgttatt
gaactgaaggggcgcgtggcctgcgagctgaacggcgccgacgagctgctgatgaccgag
atgatcttcaacggcctgttcaacgcgctgaacgtgccgcagatggtcgcgttgatcagc
tgcttcgtgtgcgacgagaaatcgaacgagatgcctaaaagcacggaagagttgagcggc
ccgctcagacagatgcaggacctggcccggaggatagcgaaggtctccaccgaggctaat
ctcgaactggacgagcacgtgtacgtcgacaaattcaagccgtttttgatggacgtgata
tacgcctggtgcaaaggcgcgacgttcctacaaatttgcaagatgacggatatcttcgaa
ggatctattatcagatgcatgcggcggctggaggaagtgctgcggcaactctgtcaggct
gcgaaaggtatcgggaatacagatttagaaaataaattcagcgaggcgatcaagcttata
aagcgggacatcgtgttcgctgcctccttatatttataa
DBGET
integrated database retrieval system
