Ooceraea biroi (clonal raider ant): 105278442
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Entry
105278442 CDS
T05778
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105278442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obo03019
]
105278442
Messenger RNA biogenesis [BR:
obo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105278442
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105278442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
105278442
NCBI-ProteinID:
XP_011335842
LinkDB
All DBs
Position
10:2158368..2169513
Genome browser
AA seq
2407 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKKNFEDSCQELSGLVQLHGLEADRHLLRCLISYVDFSKG
ELADLSAKDYFQAKLLKQECNTLLSKPSFISNLCSAIDNPLHCQKSLNPSNPKFFANLKK
TLGLTLVQEVAFAIALQHSEDSEIRALALEHTQKQLPELIKNYINSETSNKHQEGGLHDS
LPQVLQLILCQVFHDTNPYKLPSEDKKDFLKNLRRDFPRELVPVVLAPFLYPGDWETPQF
KIELNMAVSQMDGNSLVELIMELGYSFTSSVEECRTALAGLGAREISPTCAARVLSHMAH
SCSNLDDAGGLQSFWGNSAAPQDSNKEKPSETTTPTTWNVEVFIQALKEIQSTLSWNDVI
VKLDHADFIIKDRQGLSLLITGLKLGLQHQGYPPDMFPVELFYRHWDNVEGQFSLIQQIL
KCPDIFCFADYPYHSVTVDVLKAAPEGDSKEAQTWRSLNIVELLLHMAERGLYSPVQEIF
KWPIQHCPDVLVLALLQINPPITILRQELLSTLMPIFLGNHPNSAVILHHAWHANNVKIK
TIIMHAMAEWYIRGDHDQTRLSRILDVAQDLKALSALLNAQSFPFVIDLACLASRREYLK
LEKWLTDKIRDHGEVFIAACVKFLQRRCPQVMGPGIKEDPTIPKASQLPQETLTTILACL
QVCTGNVSQELSELIMTMVQNCSLMLSKNTMNRAPPPGVLRHRGLEPFNPATLGSQLFSS
KQVDPLGNLSSSLASMGLGTGLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPML
PLSSQLHSGPVGTQGPSVLPGGTTIGGLGRLGPPAGIEKARMPETSNLFPDMGQNVSKEV
EDEANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGSRREREVFNCMLRNLFEEYRFFPQ
YPEKELQITAQLFGGIIERGLVNSYMTLGLALRFVLDALKKPDGSKMYYFGITALDRFKS
RLKDYQTYCEHVRTIPHFNEFPQHLIEYIDYGLQGQEPPSRPQGPVLPKTLAAMLAPVTT
TFKTITTTTITTSTTQAKPSTTPTTSLTARPSMPSVANATNIDTLLVATDKEEKITTPPE
ALQDKTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFL
DCIKLPEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQI
DIDLKSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEP
DLKLNLKFEIEVLCKNLSIDVGELKPVVYLKDPDKLRNLEYQLSHPNKKSETTNNQQQSQ
GPIEELVGSTTSGTINPQVAPPANTTPSLPAGPPEPRFNYMDISIGGIANIAQHITINNQ
LPLFQSHPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRIRT
AARHMARNLTAGMAMITCRDQILASISTNLKQAFIAALITTTPQQKDLVEQAANVVAADN
MELACAFVQKTAIEKAVPEMDKRLVNEMELRKMARQEGRRYCDPLAKYQAERMPEQIRLK
VGGVTPQQMAVYEEFARNLPGFQPLSERDTQALFMPKPISETPVTTFTPNSAVAVATAQQ
VAAYTAAVNNDEVGAMLEKLAAEVEVLLAAIGPAAPPPQHAALHSLLESIILTRRSRDGG
AAMALLKKTVEGLLDGPIISSGVIESENLIQRYRELHLRILKCLQDPRAYGMQWTNKHVT
RCLTECREEFRYNFEAVDYLIRSHLISLPQYDVALAQAIEAGNTMATAFAMQLVQLYLID
ERQATHVTETDLFHTIETLARMAHHRTPPEGILLFRLTSLVDSLRANHDSGVLVDRAPAG
PTAHIHSGILQVRARDFDDPPGLMEKTEYLLREWVQMHHNPQHARDPTKAFSIFVHQMNI
HGILKTDDLITRFFKLSTQMCVDLCYRSVTETAAAPSMLRAKCFHSLDAFVRLVALLVKH
SGDATNTHTKINLLNKVLGIVAGVLLQDHEIRGIDFQQLPYHRIFIMLFLELCAPEPVLE
AVNFQVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLI
DLFKYLAPYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMR
NLILSAFPRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASTIQPLTFKKELDSYLKARA
PVTFLSELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIAFIRSKGHAPNMSTIAHSAHM
DIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVL
LERLIVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFESVARSCMVQKQVPT
TETEIPE
NT seq
7224 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaatttg
agtaagaaaaatttcgaggacagctgtcaagagttatcgggattggtgcagttgcatggt
ctggaggcagaccgacacttgttgcgctgtctgatctcgtatgttgacttctccaagggt
gaattagcagatttgagtgctaaggattacttccaagcaaagctgctgaaacaggagtgc
aacaccttactgagcaagccttcttttatatccaatctgtgctctgccatagataatccg
ttacattgccaaaagtcgttgaatccttccaacccaaagttttttgcgaatctaaaaaag
acacttggcttaaccttggtgcaggaagttgccttcgcaatcgcattacagcattcagag
gatagtgaaatacgtgcgttagccttggagcacactcagaagcaattacccgagctgata
aagaattacataaattctgaaacgagcaacaaacatcaggagggcggtctacacgattct
ttgcctcaggtcctccagttgatactttgccaggtttttcacgacaccaatccgtacaag
ctaccgagcgaggataaaaaagactttctcaagaacttacgacgcgattttcctcgtgaa
ctggtgccggtggtgttagcgccattcctgtatccgggggactgggaaactccgcagttc
aaaatcgagctaaacatggctgtcagtcaaatggacggtaactccttggtggagctaatt
atggaattaggatacagctttactagtagcgtggaagaatgtcggacggcattggcaggt
ttgggcgcgagggagatctcgccgacctgcgctgctcgtgtgttgtcacacatggcacat
agttgtagcaatctcgacgatgctggaggcttacagtccttttggggcaattcagctgcc
ccacaggactccaacaaagagaaaccgtcggagactaccacccccactacgtggaacgtt
gaagtgttcattcaagctttaaaagaaatacagtctacgttatcgtggaacgacgttatt
gtaaagctggatcatgcggattttatcatcaaggatagacaaggtttaagtttactgatc
acgggtcttaagctcggtcttcagcatcagggatatccccccgacatgttccccgtcgaa
ctattctatcggcactgggacaacgtagagggccagttttctttaattcaacagattttg
aagtgtccggacatattttgcttcgccgattacccgtaccattctgtgacggttgacgta
ctaaaagcagcccccgagggtgatagcaaagaggcacaaacgtggcgatcgctcaacatc
gtcgagctactcttgcacatggccgagagaggcttgtacagtcctgtacaggagatattc
aagtggcccattcagcattgtccggatgtactcgtcttggcgttactgcaaattaatcca
cctatcacgatactgagacaggaattgcttagtacactgatgcctatattcctaggcaac
catcctaattcagctgtgatcctacaccatgcgtggcatgccaacaatgtcaagataaaa
accatcataatgcatgctatggcagagtggtacatacgtggcgatcacgatcaaacaaga
ttatcgcgcatattggacgtcgcccaagatttaaaggcgttatccgcgttactaaatgca
cagtccttcccattcgtcatcgaccttgcatgtttagcttctcgacgagaatatctgaaa
ttagagaaatggctgacagacaaaattcgcgatcacggcgaagttttcattgccgcttgc
gtgaaattcttgcaaaggagatgcccccaagtcatgggtcccggtataaaagaggaccca
acgatccctaaggctagtcaactgccgcaagaaacgctcaccacgatactggcttgcttg
caagtttgcactggaaatgtttctcaggaactatcggaattaataatgacaatggtacag
aattgcagcctgatgttgagtaagaacactatgaatcgagcaccaccaccaggtgtactg
aggcatcgaggattggagccgtttaatccagcaactttaggcagccaacttttctcttcg
aagcaagttgatcccctcggcaatctcagttcgagcttggcttccatgggtcttggtaca
ggtcttggaccaccgagtagctctgcttttaacttgcccggcgctctaggacctctagtg
tcggcacccggctctccatcgcgactcatggggccttcgccaagtccgtttccgatgttg
ccgttatcctcgcaattacactcgggtccggttggcactcaaggaccgtctgtgcttcct
ggtggcacgaccatcggtggattgggacgtctcggaccgccagctggcattgagaaagcg
agaatgccggaaacctccaatctcttcccggatatggggcaaaatgtgtcgaaagaggtc
gaggatgaagcaaacagttactttcaacgtatatacaatcatccgcctcacccaaccctg
tcgatcgacgaggtgctcgacatgctgaagaagttccaggactcgggcagcagaagggag
agagaagtcttcaattgtatgctgcgaaatctgtttgaagaatacaggtttttcccccag
tacccggaaaaggaactacagataacagcgcaattattcggtgggattatcgaaagagga
ctggtcaacagttacatgaccctcggacttgcattaagatttgtgctagatgcgcttaag
aaaccggatggtagcaaaatgtactacttcggcataacagccttggatcgtttcaagagt
cgtctaaaggactatcaaacgtactgcgaacacgtcagaacgatacctcacttcaatgaa
ttcccacagcatctgatagagtacatagattacgggttgcaaggacaggagccaccatcg
aggccgcagggtccggttctcccgaaaaccttggcggcgatgttggcccccgtcacaaca
acgtttaaaactataacgacgaccactatcacgacgagcactacgcaggcaaaaccgtct
acgaccccaaccacatctcttacagccagaccgtccatgccgtcggtcgccaacgcgact
aacatcgacacgttgctcgtagcgacggacaaggaggaaaagataacgacaccaccggaa
gctctgcaggacaagaccgcttttatcttcaacaatcttagccaactaaacctgcagcag
aagtgcgacgagattcgtgagattgtcacggaggaatactggccgtggatggcgcaatac
ctagttatgaaacgtgccagcatagaattgaactttcatgctctgtactcgaatttctta
gactgcatcaaattacctgaagtcaacaaaatggtcacgagagagacattccgaaatatt
aaggttctcctgcgaagtgataagggaatagcgaacttttctgatcggtctctcttgaaa
aatttgggtcactggcttggaatgttaacgcttggtagaaataaacctattttacagata
gacatagatctaaaaagtttactcgtcgaagcatatcataaagggcagcaagaacttctt
tacgtagtaccatttgtcgcgaaagtgcttgagagctgtgcgaaaagtcgtgtttttcgt
ccacccaatccttggaccatggcaatcatgaatgtcttagcagaattacatcaagaacct
gacttgaagctcaatttgaagttcgagatcgaagtactgtgcaaaaatctaagcattgat
gttggagaactgaaaccggttgtctacctgaaagatcccgacaagttgcgtaacctggag
tatcagttgtcgcatccgaacaaaaaatcggagaccacgaataatcaacaacaatctcaa
gggcctatagaggaactggttggctcaacaaccagcggcacaattaatccccaagtcgcc
cctcccgcaaatacgacaccttcgttgccagccggcccgcctgagccacgatttaattac
atggatatatctataggaggcatcgccaatatagcccaacatattactatcaacaatcaa
ttacctctcttccaatcgcaccctcatctgaaacaattcgttcgaccagcagttgagaga
gcaattcaggaatggattcatcctgttgttgataggtctattaaaatcgctctcaccacc
agtgagcagattgtaaggaaagattttgcattagacccagaagaggtgcgaattaggaca
gcagcgcgtcacatggcgcgcaacctaaccgccggcatggcaatgattacatgtcgcgat
cagattctagcatcgatcagcacgaatttgaaacaagcgttcattgccgcgctaatcact
acgacgccgcagcagaaggatctcgtcgaacaagctgcgaatgtcgttgccgctgacaac
atggaactggcgtgtgcgtttgtgcaaaagacggctatcgaaaaagcagtgcccgaaatg
gataaacgcctagtgaacgaaatggagctacgaaagatggctcgacaagaaggacgaaga
tactgtgatcctctcgccaagtatcaggctgagagaatgccggagcaaattagactgaag
gtgggcggcgtgacgccccaacaaatggcagtgtatgaagagttcgcaagaaaccttcca
ggatttcaaccgctatccgaacgtgacacacaggcattgttcatgccgaaacctatttct
gagactcctgtcactacgtttacaccaaattcagccgtggcagttgccacggcgcaacaa
gtggcagcttacacagccgcggtcaacaacgacgaagttggggctatgctggaaaaactc
gcagcagaagtggaagttttactggctgccatagggccggcagcacctccgccacagcat
gctgctcttcacagtctgttggaatcgatcattcttaccagaaggtcgagggatggtgga
gccgccatggcgttattgaagaagactgtcgagggtttgttggatgggcctattatttct
agcggcgtcattgaatcagaaaacctaatacagcgctacagagaattgcatttgcgtatc
ttgaagtgtcttcaagatccacgcgcgtacggcatgcagtggaccaataagcatgtgact
cgctgcctaaccgaatgcagagaggaattccgatacaatttcgaagccgtggactacctc
ataagatctcacctgattagtcttccacaatacgatgtagctctggcgcaagctatagag
gcgggaaacactatggcaacggcgttcgccatgcaactggttcaactctatctcatcgac
gaaagacaggcgactcacgtcaccgagactgatctattccacacgattgaaacgttagcc
cgaatggcacatcacagaacaccaccggaaggaatcttgctgttcaggctgacaagtctg
gtagattccttacgtgccaatcacgattctggcgtgctagttgacagagctcctgccgga
ccgacggcgcacattcattccggaatcctgcaggtgagagctcgcgattttgatgatcca
cctggcctgatggagaaaacggaatatctgttgagggaatgggtgcagatgcatcataat
ccgcagcatgctcgcgatcctacaaaagccttcagtatttttgtacatcagatgaatatc
catggcattttgaaaactgatgatctgatcacaaggttcttcaagctgagcactcaaatg
tgcgtcgatctgtgctatcgttcggttaccgaaaccgcggcagcaccttcgatgctacgg
gctaagtgttttcattcactggatgcgtttgttcggcttgtggcgcttttggtgaaacat
tcaggcgatgctaccaatactcacacaaagattaacctcttgaacaaggtgcttggtatc
gtggccggtgtgctgttacaggatcatgaaattcgtggcatcgattttcagcaactgcca
tatcaccgtatcttcatcatgcttttcttggaactgtgtgcgcccgagccggtgctggaa
gccgtaaacttccaagtgctgacagcattttgtcacaccctgcacatcctacgaccggcg
aaagcgtcaggcttctgctacgcctggctggaactggtctctcaccgagtcttcatcgga
cgtatgctggctatcacgccacagcagaagtgttggggaatgtatgcgcaacttctcatc
gacctattcaagtatctcgcgccttacctgcgtaacgctgaacttgccaaacccgtgacg
agcctttacaagggtacgctgcgagtgttgttggtgttgctgcacgatttcccggaattc
ctgtgcgactatcattatggattctgtgacgtcataccgcccaattgcatacaaatgaga
aatctgatcctaagtgcgttcccgcgtaatatgcggctgccggatccgttcacgccaaac
ctgaaggtcgacatgctgcaggagatagcacacgcgccacgcgtactcaccaattttgcg
tccacgatacagccgctgacctttaagaaggaactcgactcttacttgaaagcacgtgcc
ccggttaccttcttgtccgagctgcgcagcaatctacaggtgtcgcaggaggccggggta
cgctacaacattcagttgatgaacgctctcgtgctctacgtgggcacgcaagctattgcg
tttattcgcagcaagggccacgcgccgaacatgtccaccatcgcgcattccgcgcacatg
gacatcttccagaacctggccgtcgatcttgacaccgagggccgttatctatttctgaac
gccatagcaaatcagttgcggtacccgaacagtcatacgcattacttcagctgcacgctc
ctttacctatttgctgaggcgaacacggaggcgatacaggagcagatcaccagggttctt
ctcgaaagactgatcgttaaccgaccgcatccgtggggtctccttattactttcatcgag
ctgatcaagaacccgacgtataaattctggtcacatgagtttgtacactgcgcacccgag
attgagaaattgttcgaatccgtagctcgatcgtgtatggtgcaaaagcaggtacccaca
acggagacggagatcccggagtga
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integrated database retrieval system
