Ooceraea biroi (clonal raider ant): 105278852
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Entry
105278852 CDS
T05778
Symbol
sima
Name
(RefSeq) HIF-1 transcription factor component sima isoform X3
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo04137
Mitophagy - animal
obo04140
Autophagy - animal
obo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105278852 (sima)
04137 Mitophagy - animal
105278852 (sima)
04148 Efferocytosis
105278852 (sima)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
obo03000
]
105278852 (sima)
Transcription factors [BR:
obo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
105278852 (sima)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS
PAS_11
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
105278852
NCBI-ProteinID:
XP_026829791
LinkDB
All DBs
Position
12:complement(609302..644499)
Genome browser
AA seq
1572 aa
AA seq
DB search
MNARLYQATRGGEGEAGREIEEKGGGVILGDGRQRPGRCSDPRDDNWIGKTSQGYAAFDG
RHMTAGSGIDFTSRELSNLPPPLPHSATTVPSNMDILPGNIAAPFSNITLHISDNTGPRA
RDIEMPIPRTNTTIRPSYAPGNSCNALACNIAPVLGNNGPILCNNGPISCNIAPAPCIIT
PTSANCDNTQATLPRNSVNLLAPQLETCGSSTTISKNCQLGPVDVEDLAMYFDSSADSTK
SFPTSNRAIHTRRSKQGARMDQTRQDRRDRFDAASTCDPDLYSLRPCGNLESGDLGSENP
QFSSDLAANDPQTYGPRNAGSGNLMEYSEVMSSLRPCEDLEFSNNLGFGHPCSCNFVDPG
GFNNLRPCDVEPPREAREPGRSDLGQSSESGSWFCNNCPELFNYCSEERWLQCPASDRCP
LYDTSYTYGASVLPPCMYENLHPSYNDNCYYHYTEDEQLLEDYLSNEKRKERSRDAARCR
RSRETDIFAELAAALPIAPEQAVHLDKASVMRLAIAYLKVRAVVDSIPVSLAKSESSSAE
MDELFPKALNGFILVLSSDGNMIYLSENVSDYLGVSQMDMMGQSVYEYSHPCDHDELREC
LSLKPTDNGEERTCSFFLRLKCTLTSKGRKVNLKSASYKVIHCTGRLVNIRDSNSNTMEV
DDEEREKEDESSAECDTGASLILVGCPIPHPSNIEIPLGRHTFLSKHNLNMKFTYADEKL
AEYLGWNSEELIDRSVFEFYHALDNPALDKCFKCLFSKGQCETVAYRFLGKRGGYAWVVT
QATLIHCSKQQKPISVVCVNYVLSEVEHEDEVYSVRQLAARDSGVDLVKSERTLPALVPI
EGAGPVDSTRQVVLDEEVPGEDAANSSVDDESKGEDRPLAVTASIFHSAGGKDEQERKDG
SGQDNVLPRPIQEKAFVQALKESLEESIKESLKENDEPAPGKRQNCRSLARTPFVFQGKP
AVERDSSGSIGCRDQPQAVTRHLFAPLPLTVQQQQQQQQQEQPQLSCRPSPQTATASIFA
PRTEDMNKGFLTFSEDQPGLTMLKDEPEDLTHLAPTAGDVCVPLEDTPFLSDMLDQFIFG
NDNYGCPLLSPGDTLTPELRSADLSESLKDADLVDTGRTKDAADRLADSDPFMYGDSPGS
PCSIDPSTVSPSLSKYQQSPERSVDSLDSPTGGSGGDGLSEDEMLMLGISDSVGDDEMAL
RAPYIPMSDQDEALELLISEDMVMWDSPQSVDKGSSKWLLDDREQRGSESTLAQMLRTDQ
MILRQYNDHGGGLMNPTQILGQTSKKHAIFESDRWSCNQERTDRPSNKRLHPGIHTDSAS
KRLKCEGSLFERINLEDPLLTRQQRSPTTLHKKSAPIFGSSAYGSQLLRRLVSSQTSSVT
SHAVSSSNDGGGDGKRRHDIPEQRSRVLDDIIDLAEAEGDRGGGGGGGRSHGDSLNKFDA
ISRRKWSCGAGAGGSSVLMNLLVSGCDDPLMNSRNVPTLSSRNLTSPLSVNVDNQMVPQC
ASKNNVTSLPDHLSPDTRKHLIGPFTGGGTTPIVSPTTSVMASFDSFDYDESAGLLQVGS
DLLGSLLDRGLV
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgcgtttgtaccaagcaacgagaggaggagaaggagaagccggtagagagata
gaggaaaaaggaggaggcgtcattctgggagatggtcgtcaacggccgggtcgttgctcg
gatccgcgtgacgacaattggatcggtaagacatcgcagggttacgcagctttcgacggg
cgtcacatgacggcaggaagcggaatcgattttacgtcacgcgaattatcgaatctgcca
ccgccgttgccacatagtgcgacgaccgtgcctagcaacatggacatcttgcctggcaat
attgccgctcccttttccaacattacgttgcacattagtgataatactggaccgcgagct
cgtgatatcgagatgccaatacctcgtacgaacacgacgataagaccctcgtatgcgccc
ggtaatagttgcaacgcgctagcgtgcaatattgcgccagtattgggcaataacgggcca
atactgtgcaataatgggccaatatcatgcaatattgcgccagcgccgtgcattattact
ccgacgagcgcaaattgcgacaatacacaggcaacattaccgcgcaattctgttaacttg
ctcgctccgcagttggaaacttgcggcagcagtacgacgatctcgaagaactgtcagctg
ggtcccgtcgacgtcgaagatctcgcgatgtatttcgactcgtcggcggacagtactaag
tcgttcccgacgagcaaccgtgcgatccataccagaagatcgaaacagggggcgaggatg
gatcagactcgacaggaccgacgcgatcgtttcgacgcagcatcgacctgcgatccggat
ctctatagcttacgtccttgcggcaacttggagtctggcgatctagggtctgagaatccg
cagttctctagcgacctagcggccaatgatccacaaacttacggtccacgaaacgcggga
tctggaaatctgatggaatatagcgaagtgatgagcagtctacggccttgcgaggatctg
gagttcagtaacaacttgggattcggtcatccatgttcctgcaacttcgttgatccggga
ggattcaacaatctgcgaccctgtgacgtcgagcctcctcgcgaggcccgtgaaccgggc
cgaagtgatctaggacagagctcggagtcaggcagttggttctgcaataattgtccggaa
ctgttcaactattgcagcgaggagcggtggttgcagtgcccggcaagcgatcggtgcccc
ctttacgacacttcgtacacttatggcgcgtctgttttgccgccgtgcatgtacgagaat
ctgcaccctagctacaatgataactgttattaccactacacggaagatgagcagctcctc
gaggattatttgagcaacgagaagaggaaggagagatctcgggatgctgcccgctgtaga
cgtagccgggagaccgacatcttcgctgagctcgcggccgcgcttccgattgcaccggaa
caggcagtgcacttggataaggccagcgtgatgagattggcgattgcttatctgaaagtc
cgggccgttgtggactccattccagtttcactggcgaagtccgagtcgtcgtccgcagag
atggatgaattatttccaaaggctctcaacggctttatattagtgctctccagtgacggc
aatatgatctacctctcggagaacgtcagcgattacctcggagtatcacaaatggacatg
atgggacaaagtgtgtatgaatacagccacccctgcgaccacgacgagttacgcgagtgc
ctttctctgaaaccgacagataacggtgaggagcgtacctgcagcttcttcttgcggctc
aaatgcactctcaccagcaagggtaggaaggtgaatctgaagagcgcctcctacaaggtg
attcactgcaccggcaggctagtgaatattcgtgactcgaattcgaacaccatggaggtg
gacgacgaggaacgagagaaggaggacgagtcctccgcggagtgcgacaccggcgcttct
ctgatactcgtgggctgtccgatcccgcatcccagcaatatcgagatacccctgggacgt
cacaccttcctgtcgaagcacaacctcaacatgaagttcacatacgccgacgagaagttg
gccgagtacttgggctggaacagcgaggagctgatagatcggtcggtcttcgagttctac
cacgcgctcgacaatccggcgttggacaagtgcttcaagtgcttgttcagcaagggccag
tgcgagaccgtggcgtacagattcctcggcaaaaggggcggctacgcctgggtcgtcact
caggccaccctcatccactgctccaagcagcagaagccgatctccgttgtctgcgtcaac
tacgtgttaagtgaggtcgagcacgaggatgaggtgtacagcgtacgccagttggccgca
cgtgacagcggcgtcgatctggtgaagtctgagaggacgttgccggctctggtgccgatc
gagggcgctggaccagtggactcgacgaggcaagtggtgctggacgaggaagttcctgga
gaagacgccgcgaactcgagcgtcgacgacgagtcgaagggcgaggatcggccactggcc
gttaccgcctcgatcttccattcggccggcggaaaggacgagcaagaacgcaaggacggc
tcagggcaggacaacgtcttgccgagaccgattcaggagaaggcgtttgttcaggccctc
aaagagtctctcgaggaatcgatcaaggaatccctgaaggagaacgacgagccggcaccc
ggaaagcgacagaattgtcgatcgctcgcgaggacgcccttcgtgttccagggtaaaccg
gcggtggagcgcgattcttcgggtagcattggatgccgtgatcaaccgcaggctgttacg
agacatttgtttgcaccactcccactcaccgtacaacaacagcagcagcaacaacagcaa
gagcaaccgcaactatcttgtcgaccgtcaccgcagacggccacggcaagcatcttcgcg
cctcgcaccgaggacatgaacaagggcttcttgactttcagcgaggatcagccgggtctc
accatgttaaaagacgagccggaggacctgacacatcttgcgcccacggccggcgacgtg
tgtgtacccctggaagacactcccttcctgtcagatatgttggaccagtttatcttcggc
aacgacaattacggctgtcccctgctgagcccgggcgacaccctgacaccggaactgcgc
tccgcggatctctcagagtccctaaaggacgcagatttagtggataccggcaggaccaaa
gacgcggccgatcgtctggctgacagtgaccctttcatgtacggcgactcgcccggaagc
ccgtgcagcatcgacccgagtacagtttcaccgtctctttcgaaataccagcagagtcct
gagcgcagcgtggactcgttagacagtcctacaggaggtagcggcggcgacgggctctct
gaagatgagatgctgatgctaggtatcagcgacagtgtaggagacgacgagatggccctc
agagcaccgtacatcccgatgtcggaccaagacgaagcactggaactgcttatcagcgag
gacatggtcatgtgggactcgccgcaatccgttgacaaagggtcctcgaaatggctactc
gacgatcgagagcaacgtggatccgagtccactctggcgcagatgttacgaaccgaccaa
atgatactgcggcaatacaacgatcacggcggaggtctaatgaatccgacgcagatcctc
gggcagacatccaaaaaacacgcaattttcgaatccgatcggtggtcctgcaaccaggaa
cgaaccgaccgacccagtaataagcgcctccatcccggaatccatacagactccgcgagc
aagcgtctcaagtgcgaaggctcgcttttcgagcgcataaacctcgaggaccctctgctg
acgaggcagcagcgatcaccgacgacgctccacaagaaatccgcaccgattttcggcagc
tccgcctacggcagtcaactgctgcgtcgtctggtttcgtcgcagacgtcgagcgtcacg
tcgcacgcggtctcctcatcgaacgacggcggcggcgacggcaaacgtcgccacgacatt
ccagagcagcgcagccgtgtcctcgacgacatcatcgacctcgccgaggcggagggtgac
cgcggtgggggaggaggcgggggcagaagccacggagacagcctgaacaaattcgatgcg
atcagccggaggaagtggtcgtgcggcgccggcgccggtggaagcagcgtgctaatgaat
ctcctggtttccggctgcgacgatcccctgatgaattcccgcaacgtgccaacactgtca
tcgaggaacctgacgtccccgctgtccgtcaacgtggacaaccagatggtaccgcaatgc
gcgagcaagaataacgtcacgtctctgcccgatcatctcagcccggacaccaggaaacac
ctgatcgggccgttcaccggcggaggaacgactccgatagtctcgccgacgacgtccgtg
atggcgtcgttcgacagcttcgactacgacgagtccgcaggcctgttgcaagtggggtcg
gatctcctcgggagcctgctcgaccgaggtctggtgtga
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integrated database retrieval system
