Ooceraea biroi (clonal raider ant): 105279251
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Entry
105279251 CDS
T05778
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105279251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obo03041
]
105279251
03009 Ribosome biogenesis [BR:
obo03009
]
105279251
Enzymes [BR:
obo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105279251
Spliceosome [BR:
obo03041
]
Complex A
U2 snRNP components
U2 related factors
105279251
Complex B
105279251
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105279251
Ribosome biogenesis [BR:
obo03009
]
Eukaryotic type
90S particles
Helicases
105279251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
ResIII
AAA_7
ABC_tran
Flavi_DEAD
AAA_30
AAA_16
T2SSE
Motif
Other DBs
NCBI-GeneID:
105279251
NCBI-ProteinID:
XP_011337204
LinkDB
All DBs
Position
7:7897818..7905340
Genome browser
AA seq
719 aa
AA seq
DB search
MSKRRIEVVDPYVKRKATDGSTSNNVATTASTATKSQVQFNPYTMLPYTPKYYELYKKRI
TLPVFEYRADFMRLVSQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGSKGVACTQPRRVA
AMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLDAYQVI
LLDEAHERTLATDLLMGVLKEVIKQRLDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIQMCEEIPGDLLLFLTGQEEIEEACKRIKREMDNLG
PEVGELKCIPLYSTLPPNLQQRIFEAAPPTKSNGAIGRKVVVSTNIAETSLTIDGVVFVI
DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDN
TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTD
LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKF
AHIDGDHLTLLNVYHSFKQHMEDVHWCYDNYVNYRSLKSGDNVRQQLSRIMDRFVLKRTS
TDFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYN
EFVLTTKNYIRTVTDIKPDWLLMIAPQYYDLQNFPQCEAKRQLEMIQAKLDSKQYQEGF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaggatcgaggtcgtggacccgtacgtcaaacgaaaagccacggacggt
tcaacgtccaacaatgtggcgaccacagcgtcgacggcgacgaagagccaagtacaattc
aacccatacaccatgctgccgtacacaccgaagtactatgaactttataagaaaagaata
actctgcctgtgttcgagtatcgtgctgatttcatgagattggtgtcccagcaccaatgc
atcgttctcgtcggagagacaggatctggcaagaccacacaaataccgcaatggtgcgtc
gaatattcaaggagtattggatccaaaggagtcgcctgcacacagccgaggagagtggcg
gcaatgagcgtcgctcaaagagtgtcagaggagatggatgttgccttaggccaagaagta
ggatacagcatccgttttgaagattgtagttccccgaaaactgtgttgaagtacatgacc
gatggtatgttacttcgtgaaggtatgtccgatcccatgctggatgcttaccaagtgata
ctgctcgatgaagcgcacgaaagaacgttagccaccgacttgctcatgggtgttttgaaa
gaagtgattaaacagagactggatttgaaacttgtgattatgagtgccaccttagacgcc
gggaagtttcagcagtacttcgataacgcacctctcatgaacgtacctggtagaacgcat
ccggtcgagatattttacacgccggagccggagagagattacctagaggctgcgatcagg
accgtcatccagatccagatgtgcgaggagatccccggcgatctcttgctgtttttgact
ggccaggaggaaatcgaggaggcgtgcaagagaatcaaacgagagatggacaacctggga
cctgaagtcggcgaactgaagtgtataccgttgtactcgacgctgccgccgaatctccag
cagagaatattcgaagccgctccacctaccaaatctaacggcgctatcggtcgtaaagtc
gtggtgtcgaccaatatcgcagaaacatcgttgaccatcgacggagtcgtcttcgttata
gatcctggttttgccaagcaaaaagtgtacaatccgcgaatccgtgtcgagtctctctta
gtgtcgcctatcagtaaagcctccgcgcaacagagagccggacgtgctggtagaacgagg
cccgggaagtgtttcagattgtatacggagaaggcgtacaaaaacgagatgcaggataac
acgtatcctgaaatcttgcgttccaatctcgggagcgtggtgctgcaactgaagaaactt
ggcatcgacgatttggtgcatttcgattttatggacccgcccgcaccggagactctcatg
cgagcgttggagctcctgaattacctggcagctctcgacgacgatgggaatttaacggac
cttggcgcagttatggcagaattcccattggatccccagttggcgaaaatgctcatagcg
tcttgcaatcacaattgtagcaacgagatactcagtatcaccgctatgctttcagtccca
cagtgctttgtgagaccgaacgaatcgaagaaggctgccgatgatgcaaaaatgaagttc
gcgcacattgatggcgatcatctgacgttacttaacgtgtatcattccttcaagcaacat
atggaggatgtccattggtgctacgacaattacgtgaactaccggtcgttaaagagtggc
gacaacgtgagacagcaattgagtagaataatggatagattcgtgttgaagcgcacgtcg
acggacttcaactcgaaagactattacatcaacatcaggaaagctctcgtcaatggcttc
ttcatgcaggtggcgcatttagagagaacaggacattatctaactatcaaggataatcag
atagtgcaattgcatccgagtagctgtctggatcataaaccggaatgggttatttacaat
gaatttgtgctcactaccaagaattacattagaacggtcaccgacatcaaacccgactgg
ttgcttatgatagcaccacaatattacgatctacaaaatttcccccaatgcgaggcgaag
aggcaactcgaaatgattcaagcgaaattagactcgaagcaatatcaggaaggcttctaa
DBGET
integrated database retrieval system