Ooceraea biroi (clonal raider ant): 105279596
Help
Entry
105279596 CDS
T05778
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03022
Basal transcription factors
obo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105279596
09124 Replication and repair
03420 Nucleotide excision repair
105279596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obo03021
]
105279596
03400 DNA repair and recombination proteins [BR:
obo03400
]
105279596
Enzymes [BR:
obo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
105279596
Transcription machinery [BR:
obo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105279596
DNA repair and recombination proteins [BR:
obo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105279596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
SWI2_SNF2
TniB
Motif
Other DBs
NCBI-GeneID:
105279596
NCBI-ProteinID:
XP_011337769
LinkDB
All DBs
Position
13:complement(2799130..2806824)
Genome browser
AA seq
798 aa
AA seq
DB search
MGPPKRFKRDTVFNKGKWKKRKDDYDEYNDEDSIDSNEADGVPDAAKNDVEKQDESAIED
EFGAKDYRSQMILKLDCASRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIH
EYKLTAYSLYAAVSVGLQTQDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNK
YFIESPFPEVLQKLLKDPVIQECRLRKIVEDTEADDIVTNVQAKIKAPQFGAKAAGNVPA
PSKTNPETESDQVITETVAIPEDITAFYDKIDKEDEDEEEEQELKTVSFEVNQEKIEVIQ
KRCIELEHPLLAEYDFRNDTVNADINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLP
CGAGKSLVGVTACCTVRKRALILCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPM
GCGILITTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSH
CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYRE
YLGCKMSKKLLLYVMNPNKFRCCQYLIRYHERRGDKTIVFSDNVFALKHYAIKMNKPYIY
GPTSQNERIQILQNFKFNMKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLG
RILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMDEEPD
LMYTSREEQGQLLQQVLTASDTDADEERIPGEGARPIIRKAGTMTSMSGADDAVYYEYKK
AASSSTANKHPLFKKFRT
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgggtccaccgaagcgtttcaagagagatactgtttttaataaaggtaaatggaagaaa
cgtaaggacgattatgacgaatacaacgatgaagattcaattgatagcaatgaagcggat
ggtgtgccagatgcagccaaaaacgatgtagaaaagcaggatgaaagtgcgatcgaggat
gagtttggtgcaaaggattatcgctcgcaaatgattttaaagctagactgtgcgtctaga
ccattatgggtggcaccaaacggacatatctttctggagtccttttctcctgtgtacaag
catgctcatgattttttaatagctatatcggaacctgtgtgcaggcctgaacacatccac
gagtataaactgaccgcgtattcactctacgccgcagtcagcgtaggtctgcaaacgcag
gatataatagaatatttgaaaagactgagtaagactagcattcctgatggtataattgaa
tttatcaagctgtgtacattgtcctacggaaaagtcaagctggtcttaaaacataacaaa
tattttatcgagtcgccgtttcctgaagtattgcaaaaattactgaaggatccggtaatt
caagaatgtcgattgaggaagatcgtggaagatacggaagctgatgacattgttacaaat
gttcaagccaaaataaaagcccctcagtttggcgcaaaagcagctggtaatgttcctgca
cctagcaagaccaatccagaaaccgaatctgaccaagtgataacggaaacggtcgctatt
ccagaagacataactgcattctatgataaaatcgacaaggaggacgaggacgaggaggaa
gagcaagaattaaaaacagtcagtttcgaagtgaatcaggagaaaattgaagttatacaa
aaacgatgcatcgagctggaacaccctctactcgcagaatacgactttcgcaacgatacc
gtaaatgcagacataaacatcgacttgaagccgtcagctgtgttaaggccttatcaagag
aaaagcttgcggaaaatgtttggcaatgggcgagccagatctggggtgatagtcttacct
tgcggggctggtaagagtttagtaggagtgacagcttgctgcacggtgcgcaagcgcgcc
ctaatactgtgcaactccggcgtgtcggtggaacagtggaagcagcaatttaaaatgtgg
tcgaccgctgacgattccatgatctgtcggttcaccagcgaggcgaaggacaaacctatg
ggctgtggaatattgatcaccacgtattccatgatcacgcacactcagaaacggtcgtgg
gaggctgagcagacgatgcggtggcttcaggaacaggagtggggtattatggttctggac
gaggtacacactattcccgcaaaaatgttccgtcgagtattaacgatcgtccagtctcac
tgcaagttgggcctaacggcgacgctcctgcgagaagatgataaaattgccgacttgaac
ttcttaatcggccctaagctgtacgaggctaactggctggagttgcaaaagagaggattt
attgcgagggtacagtgcgcggaggtctggtgtccaatgacgccggaattttatagggaa
tatctcggttgcaaaatgagtaaaaaattgttgttgtacgtgatgaatccaaataaattc
cgttgctgtcaatacttaatacggtatcacgagagacgcggcgataagacgatcgtcttc
tcagacaacgtgtttgcattgaagcattacgcgattaaaatgaataaaccatacatttac
ggtcctactagtcagaatgaaaggatacaaatcttgcaaaacttcaagtttaacatgaag
gtgaatacaatattcgttagcaaagtcgcggatacctctttcgatttaccggaagccaac
gtcctgatacaaatctcgtctcacggtggatccaggaggcaggaggcacaacgattggga
cgtattctcagggctaagaaaggagcaattgcggaggagtataacgcatttttctacacg
ctcgtgtcgcaggacacgatggaaatgaattactcgcggaagcgtcaacggttcctcgtg
aatcaaggatacgcgtacaaagttattacgaaactcgccggcatggacgaggagccagat
ttaatgtacacgagtcgggaagaacagggtcagctgttgcaacaagtcttaacggccagt
gacacggatgcggacgaggaacgtatacctggtgaaggagcaagaccgattatacgcaaa
gctggcactatgacgtcaatgtctggggcggatgacgccgtctattacgagtataagaaa
gctgccagctcgtcaacagcgaataagcatccactctttaagaaattcagaacgtga
DBGET
integrated database retrieval system
