Ooceraea biroi (clonal raider ant): 105281909
Help
Entry
105281909 CDS
T05778
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
105281909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obo03021
]
105281909
03019 Messenger RNA biogenesis [BR:
obo03019
]
105281909
Transcription machinery [BR:
obo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
105281909
RNA polymerase I system
105281909
Messenger RNA biogenesis [BR:
obo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
105281909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW6_SPT5
KOW7_SPT5
KOW2_Spt5
Spt5-NGN
KOW5_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
CTD
SH3_KIN17_C
Motif
Other DBs
NCBI-GeneID:
105281909
NCBI-ProteinID:
XP_011341780
LinkDB
All DBs
Position
2:19105020..19110258
Genome browser
AA seq
1110 aa
AA seq
DB search
MSDSEAASDAGSTGGRSRSGSRSRSPSRSSASRSPSRSRSRSRSASGSEDGDARMDEAEE
VRSGDEEAVEPEEEPEGEDLEGSSEYDEEEEEDEDRPRKKKKKDRYGGFIIDEAEVDDEV
EDDDEWEEGAQEIGIVGNEVDELGPTAREIEGRRRGTSLWDSQKEDEIGEYFKKKYADES
ITARHFGDGGEEMSDEITQQTLLPGVKDPNLWMVKCRIGEEKSTALLLMRKFLTYQFSGE
PLQIKSVVAPEGVKGYIYIEAYKQPHVKAAIENVGNLRMGIWKQQMVPIKEMTDVLRVVK
EQTGLKAKQWVRLKRGIYKDDIAQVDYVDLAQNQVHLKLLPRIDYTRPRGALRTAQSESE
ALKRKKKRRPAAKPFDPEAIRAIGGEVTSDGDFLIFEGNRYSRKGFLYKNFTTSAIIAEG
VKPTLSELERFEEAPEGVEIDLSGTPGTGVSGKEDQAVTHSFSNGDNVEVCEGELINLQG
KIVSIDGNMIMVMPKHEELKEALEFQASELRKYFTQGDHVKVVAGRYEGDTGLIVRVEQN
RVVLFSDLSMHELEVLPRDLQLCSDMATGVDSLGQFQWGDLVQLDAQTVGVIVRLERENF
HVLSMHGKVVEARPQGLTKRRENRNAVALDSQQNTIQKKDIVKVVDGPHAGRGGEIKHLY
RSFAFLHSRMFVDNGGIFVCKTRHLQLSGGNKTSSINSASPVAGFMSPRIASPMHPSGGG
FGRGGGGGGRGRGRGGGGARRDRELIGTTIKITGGPYKGNVGIVKDATETTARVELHSTC
QTISVDRSHIANVGVPTKDGGFSSYNRTPAYGAGGQTPMYARDGSKTPMHGSQTPMYENG
SRTPHYGSMTPSHDGSRTPGQSGAWDPSVTNTPARTNDFDGYSIEEGGSPGYAPGYPPTG
GPYTPQTPGTMYGSEQSFSSYQPSPSPAGSATASPSPAGYVATPSPSGTGYTTSPHGAFA
TPSPMGYSPMTPVAGSPYNPQTPGSGLDAGVGSGVIGSSEWHTTDIEVRIRDSYDDPALA
GQQAIIRGISGGMCTVYLPTEDRVVNLVCDQLEPVIPSRGDRVKIILGEDREAVGTLLSI
DNQEGVVKLNTEEIKFLQLKFLCKMKAPST
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattcggaagctgccagcgacgcgggaagtacgggcggaaggtctcgcagtggc
tctcgcagtagaagtccgtcgcggagctcagcgtccaggagtccctccaggtcccgatcg
cgttcccgatcagcgtctggttctgaagacggagatgcaaggatggacgaggcagaggag
gttagatcgggagacgaggaagctgtggaaccagaagaggaacctgaaggagaagatttg
gaaggcagtagtgaatatgacgaggaggaagaggaggatgaagacagaccgaggaagaaa
aagaagaaagacagatatggtggtttcatcatagacgaagcagaagttgacgacgaagtt
gaggacgatgacgaatgggaggaaggtgctcaagaaattggcatagtgggaaatgaggtg
gatgaattgggaccaactgcacgtgagattgaaggacgtcgtaggggtacaagcctctgg
gattcgcagaaagaagacgaaattggagaatacttcaagaaaaaatatgctgacgagtcg
atcactgctcgacactttggcgacggtggcgaagaaatgagcgacgaaataactcaacag
acactgctacctggtgtaaaagatcccaatttatggatggtaaagtgtcgcataggagaa
gaaaaatccactgcgcttctgttgatgcggaaatttctcacctatcagttttcaggcgaa
ccacttcagataaaatctgtcgtggcaccggaaggtgttaagggctacatttatatagag
gcttacaagcagccacacgtaaaggctgccattgagaacgttggaaatctcagaatggga
atatggaagcaacagatggtgccgattaaagagatgacggacgtgctgcgagtcgttaaa
gagcagacaggtttgaaagctaaacagtgggtccgtttgaaacgaggcatttataaagac
gacatagctcaggtcgattacgtcgacctggcgcaaaatcaggttcacctgaaattactg
ccgagaatcgattacactaggccacgcggtgcgttaagaacagcacagagcgaatccgag
gcgttgaaacgtaaaaagaaaagacgaccggcagcaaagccgttcgatcctgaagcaatt
cgggcgattggaggagaagttactagcgacggggatttccttattttcgaaggaaacaga
tacagtcgtaaagggtttctttacaaaaatttcaccacaagtgctattatcgcggaaggc
gttaaacctacgctttccgagctagaaagatttgaagaggcgcctgagggtgtcgagata
gacttaagcggaacaccaggaactggagtttctggaaaagaagaccaagctgtaacgcat
tcctttagcaacggggataatgtagaggtttgtgagggcgaattgatcaatttacaaggg
aaaatcgtctctatagacggaaatatgataatggtaatgcccaaacatgaagaactcaaa
gaagccttggagttccaagcatcggaattacgaaaatatttcacacaaggcgatcacgtc
aaggtcgtagcggggaggtacgaaggcgacactggcttaatcgtcagggtagaacagaac
agagtagttttgttctcggatttatcgatgcacgaactggaagttcttccaagggatcta
caattatgctctgacatggcgaccggtgtcgacagcttgggacagtttcagtggggcgat
ctggtacagctcgacgcgcaaaccgtaggcgttatcgtgcgattggaacgtgagaatttc
catgtgctctccatgcatggaaaagtggttgaggcgagaccgcagggtctcacgaagcgc
cgggagaacagaaacgcggttgccctggactcgcaacagaacacgatacagaaaaaggat
atcgtgaaggtggttgacgggccgcatgcaggccgaggtggagagatcaagcacttgtac
aggagtttcgcttttctacactcacgaatgtttgtcgacaacggtggaatattcgtgtgc
aagaccaggcatttacagctgtccggtggcaacaaaactagctccataaattctgcgtca
cctgtggcggggtttatgtctccgaggattgcctctccgatgcatcctagcggaggcggt
tttggacgaggcggtggcggcggtggaagaggcagaggtcgtggcggtggcggtgccaga
cgtgacagagaattaatcgggaccaccatcaagataacgggtggaccgtacaagggcaat
gtgggtatcgtcaaagacgcgacggagactacagctcgcgtggagctgcactctacatgc
cagacgatttcggtcgatcgatctcacatcgcgaacgttggagtcccgacgaaagacggg
ggcttcagcagctacaacagaactccggcttacggagccggtgggcagactccgatgtac
gccagggatggatcaaagacacctatgcacggttcccagacacctatgtacgaaaacggc
tctcgtactcctcattacggttcgatgacaccatctcacgacggttcgcgaacacctgga
cagtcgggagcctgggacccttcggttaccaacacacctgcaagaacgaacgacttcgac
ggctacagcatagaagagggtggctcgcccggttacgcgcctgggtatcctcccactgga
ggaccgtacactccgcaaactccgggcaccatgtacggctcggaacaaagtttcagttcg
tatcaaccgagtcctagtcccgcgggcagcgccaccgctagtccaagtcctgcgggatat
gttgctactccgtccccaagtggcacaggttacaccaccagtccacatggagcattcgcg
acaccctctccgatgggctacagtcctatgacacccgttgcaggtagtccatataatcca
caaactcccggttccggactggacgcgggtgtcggttcaggcgtgataggtagttcagaa
tggcacacgacagatatcgaagtacgcattcgcgactcctacgatgatcccgcgctcgcc
ggacagcaggctatcattcgaggcatttctggtggcatgtgcaccgtttatctacccacc
gaggatcgagttgtaaacctagtgtgcgaccaattggaacctgttataccatcgcgcggt
gaccgagtaaaaatcattctcggagaggatcgagaagctgtcggcactttactctccatt
gacaatcaagagggtgtcgtaaaacttaacacggaggagattaaattcttacagctgaaa
tttttgtgcaagatgaaagcacctagcacataa
DBGET
integrated database retrieval system
