Ooceraea biroi (clonal raider ant): 105281999
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Entry
105281999 CDS
T05778
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105281999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
obo03400
]
105281999
DNA repair and recombination proteins [BR:
obo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105281999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
PA28_N
Motif
Other DBs
NCBI-GeneID:
105281999
NCBI-ProteinID:
XP_011341920
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Position
7:complement(5206742..5220579)
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AA seq
922 aa
AA seq
DB search
MAVQPNQQFSMDPPTQQSFVRFFKSLPEKLDTTIRFFNRSDYYTVHGSDALFAAQEVFKT
TSVCKMIGAEPHKTKGVILNKGHFETFVRDLLLVKQYRVEVYINQGSSKNQNWVLEYKGS
PGNLSHFEDILFGNNDVAVGVSVIAVKLGAEGKSRIVGLSCVDVVSTLISVIEFQDNESF
SNLESLVVTLAPKECLLIQGEGSYEFQTLKQLMERSNVLVTLRKKSEFSSDSIIDDLNTL
IKFKKGQKLDAQSLPEVNLNIAMSATSALIKYLDLTSDEGHMNHFTLNQMEQSRYIRLDS
AAMKALNVEPRADAVSTLQGNPVASVLTMLDKCRTAQGHRLIAQWVRQPLRDLSLIKERH
DIVELLVKDNELRSVLSDDYLKRIPDLQQLAKKLARKKSTLQDCYKIYLCVSYLPKLLEQ
LKPEASVTALKTMIMDPLKELIEDMDKFQQLVEQTIDLDAAEKGDFMVNPGFADDFKALK
DAMDETEEKIQQLLGKAADDLCLEAGKTIKLESNQQFGYYFRITLKEEKILRNKKHYAVL
DSNKTGVRFRNNKLSGLNDDFIAARDKYLEKQKDVITEIVGIAAGYSDTVRVIGSVLACL
DVLTAFASAAVSANKVYVRPEMLPSEEGELNLVQVRHPCVEMQQGIDYIANDVSFKRDQC
HFCIITGPNMGGKSTYIRSVGVTALMAHIGSFVPCDKATISLLDCILARVGADDSQLKGL
STFMMEMIESAAIMKTATCNSLVIIDELGRGTSTYEGCGIAWSIAEHLARDIKSYCLFAT
HFHEITRLAEEIPTVKNQHVTALVEDNKLTLLYKVKPGICDQSFGIHVAKMANFPEDVIE
FAKRKQAELENYQSVVFEGSENPQKKRKIVQEAETLISEFLAKCKNLDQSLSDAELETQV
SSLKKNVFSHKNPYIEALLGAP
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggcagtacaacctaatcaacaattcagcatggatcctcctacgcaacaaagcttcgtc
agattttttaaaagtttgccagagaaacttgacacgacgatacggttcttcaatagatcg
gactactatacagtgcatggaagcgatgctctctttgctgcacaagaagtatttaaaaca
acatctgtctgtaaaatgattggagctgaaccacacaaaacgaaaggagttattctcaac
aaaggccactttgagacatttgtgcgcgatttattattagtaaagcagtacagagtggaa
gtttatattaatcaaggctcctctaaaaatcagaactgggtcttggagtacaaaggttcg
cctggcaatctatctcactttgaagatatcttatttggtaataatgatgtagctgtgggt
gtatccgtaatagctgtgaaactgggtgcagaaggaaaatcgagaattgtaggtttaagt
tgcgtggacgttgtttcaactctaatttcagtcattgaatttcaagacaacgagtcattt
tcgaacttagaatcgctcgttgtgactcttgccccgaaagaatgtttattaattcaaggt
gaaggcagttatgaatttcaaacccttaaacaattgatggaaagaagtaacgtgttggtt
actttaagaaaaaaaagtgaattttccagtgattcaatcatagatgacttaaacacatta
ataaaatttaaaaaaggccagaaactggatgcacaatcactgcctgaagttaatttaaac
atagctatgtctgctacatccgctcttattaaatatttagatttaacgtcggacgagggc
catatgaatcactttacgctaaaccaaatggagcagtcacgatacataagactggattct
gcggcgatgaaagctcttaatgtcgagccgcgtgctgatgcggtttccaccttgcaaggg
aatcctgttgccagtgttttaacaatgttagacaaatgtagaaccgcacaagggcacaga
ctaattgcgcagtgggtgcgacaacccctcagagacctatctctaataaaagagcgacat
gatatcgttgagttgttggtaaaggataacgagttgaggtccgtcctgagtgacgactat
ctgaaacgtataccagacttgcaacagcttgcgaaaaagttggccagaaaaaagtcgaca
ttgcaagattgctacaaaatttacctgtgcgtatcgtacttgccaaaattattagaacaa
cttaaaccagaggcaagtgtgacagcactgaaaacgatgataatggatccgttaaaagag
cttattgaggatatggacaaatttcagcagctggtggagcaaacaatcgatttggatgcc
gctgaaaagggagactttatggttaatccgggattcgcggatgatttcaaagcgttgaag
gatgccatggatgagacagaggaaaagatacagcaattacttggtaaagcagcagatgat
ctttgtttggaagcgggaaaaacgatcaagttagaatcgaatcaacaattcggttactac
tttcgtatcacattaaaggaagagaaaatacttcgaaataaaaagcattacgctgtcttg
gattctaataaaactggtgtgagattccggaacaataagctaagcggattgaatgacgat
tttatagccgctagagataaatatttggagaaacagaaagatgttattacagaaatcgtg
ggtattgcagctggttatagcgatacggtgcgtgttatcggtagtgtgctggcatgcctc
gacgtcctcactgcatttgcttccgcagcggtgagcgctaacaaagtgtacgtacgaccg
gagatgctcccgagtgaagaaggcgaactgaatctcgttcaagttagacatccgtgtgta
gaaatgcaacaaggaattgattatatcgccaatgacgttagttttaaacgagatcagtgt
catttttgcattattactggcccgaacatgggtggtaagagcacctacatcaggtccgtc
ggtgttactgcgttaatggctcacatcggtagttttgttccctgcgataaagcgactata
tcattattggactgtatactggctcgagtaggagctgatgactcccagttaaagggactg
tcgacatttatgatggagatgatagaaagcgctgctattatgaaaacagcaacttgtaat
tcccttgtgattatcgatgagttaggcagaggaacatctacttacgagggttgtggtatt
gcatggtcgatagctgaacacttggcgagagatataaaatcgtactgtctatttgctacg
cacttccacgagatcaccagattagccgaggaaatccccactgtaaagaatcaacacgtt
actgctcttgttgaagataataaattgacactgctctataaagtaaagccgggaatctgc
gaccaaagctttggcattcacgtggccaaaatggctaatttcccagaagatgtgatagaa
tttgctaagagaaagcaagcagagctggagaattatcaaagcgtagttttcgaaggatct
gagaatccccagaagaaacggaaaattgttcaggaagcggaaacgcttatctcggagttt
ctcgcgaaatgtaaaaatttggatcaatctttgtccgatgccgaattagaaactcaggta
tcatcgttgaagaagaatgttttctctcataagaatccttacattgaagcattactcggt
gctccttaa
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