Ooceraea biroi (clonal raider ant): 105282010
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Entry
105282010 CDS
T05778
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105282010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obo03021
]
105282010
03036 Chromosome and associated proteins [BR:
obo03036
]
105282010
Transcription machinery [BR:
obo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105282010
Coactivators
SAGA/TFTC/STAGA complex
105282010
Chromosome and associated proteins [BR:
obo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105282010
STAGA complex
105282010
TFTC complex
105282010
SAGA complex
105282010
SLIK complex
105282010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_HPS5
WD40_like
PEP5_VPS11_N
Beta-prop_Nup120_160
WDR54
Cytochrom_D1
Beta-prop_DCAF12
ERp29
VPS8_N
Motif
Other DBs
NCBI-GeneID:
105282010
NCBI-ProteinID:
XP_011341949
LinkDB
All DBs
Position
7:complement(5299412..5302691)
Genome browser
AA seq
650 aa
AA seq
DB search
MEKNAMVAVLQLLKKYNLKGTEELFRKEANLTDVTIDDTQQTDSEVTSVLSAYKSEGDPA
QYEKAYSELKKFVEGALDIYKHELGTILYPVLVHMYLELVYNNHSEEAKQLMEKFSENLE
EYYQGDLKRLSNVTKREQMAGNEITDTFKSNQFIIRMSRDTLSILKRHLQEKKHSVLLNI
IQEHLYFDMYEGVARNKEQIDAISGAMGGEATRQDNKAKVYYGLLKEPDIQCVPPAEEEE
DDTAGGDGDKPKKKKAKKDPLFSKKTKSDPNAPSVGRMPLPNLKDADKLEKVKALREASK
RVVLGSDTLPSICFYTLLNAVHTVTTAEVAEDSSLLAIGFADSGIKVWSLIPQKLRLMKT
GEQLQDIDREADDVLVRMMDDRTAETARNLYGHSGPIYSLSFSPDRNLLLSSSEDTTIRL
WSLHTWTCVVCYKGHLFSVWCVKFSPHGYYFASTSNDKTARLWATDSHQPLRIFAGHYSD
VDVVQFHPNSNYVATGSSDMTVRLWDCVTGNQVRLMTGHKGPIYSLAFSAEGRFLASAGA
DTRVLVYDLAHGHLVAALSGHTGNIHCLSFSRDGNILVSGSLDYTLKLWDFTKLAEEMSL
EDVNVSHNPDVKTNAESYLLRTFPTKTTSVLTLHFSRRNLLLGVGMFDST
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaacgctatggttgctgttctgcagcttctgaagaaatataatttaaaggga
accgaagaattatttagaaaggaagctaacctaacagatgtcacgattgatgatactcaa
caaactgattccgaggtgaccagcgtcctgtctgcttacaaaagcgagggagatcctgca
cagtatgagaaagcgtacagtgaattgaagaaatttgtagaaggagccctggatatttat
aagcatgaattgggtactatattgtatccagtattggtacacatgtatctggagctagtt
tacaataaccattctgaagaagcgaaacagctcatggaaaaatttagcgaaaatttagag
gaatattatcagggtgacttgaagagattatccaacgtgacaaaacgtgagcaaatggca
ggaaatgagataacggatacctttaaatcaaatcagttcataatcaggatgtcgagggac
accctttctatattgaagcgacacttacaagagaagaaacacagcgtcttattaaatatc
atacaggagcatctctattttgatatgtatgaaggcgtcgctcgtaataaggaacagata
gacgcgatatctggagctatgggaggggaggctaccaggcaagataataaggccaaagta
tattatggacttttgaaggagccagatatccagtgcgtaccgccggccgaagaagaagag
gacgacacagctggcggagacggagacaaaccaaaaaagaaaaaggctaaaaaggatcct
ttattctcgaagaaaactaagtcagatccaaatgcaccgtccgtaggcagaatgcccttg
cccaatttaaaagatgcggataaactggagaaagttaaagcactgagggaagcatcgaaa
agggttgttctgggatctgacacgttaccatccatatgcttttacacattgttgaacgcg
gttcatactgtaactacagcagaagtagcggaagattcaagtttattagctatcggattt
gcggattccggtataaaagtatggagtttaattccacaaaagctgagactgatgaaaacg
ggtgaacaactgcaagatattgacagagaagcagatgatgtattggtcagaatgatggac
gatcgaacagccgaaactgcaaggaatctgtatggccatagtggaccaatttacagtctt
tcattcagcccggatagaaatctgttactttcatcatcagaagataccacaataaggcta
tggtcactccatacgtggacttgcgtggtctgctataaaggccacctcttttcggtatgg
tgcgtaaagttctcgccacacggttattactttgcaagtacttcaaacgataaaactgct
aggctgtgggcgactgattctcatcaaccgttacgaatatttgccggccattactcggac
gttgacgtagttcagtttcatccaaattcaaactacgtcgcgactggctcgagtgacatg
accgtcagattgtgggactgcgtgaccggtaaccaagtgcgactaatgactgggcacaaa
ggaccgatctactctctcgccttctcggcggaaggacgatttttggcgtcagccggcgcc
gatactcgagtactcgtgtatgacctggcacacggtcatcttgttgcggctctatccggt
cacaccggtaacatacattgcctctcgtttagtcgagatggcaatatcttagtttcagga
tctttggactacacgctaaagttgtgggacttcacgaagttagcagaagagatgagttta
gaggacgtcaacgtttcgcacaacccagacgtgaagaccaacgcggaatcgtatctattg
cgtactttccctacaaaaactacgtctgtcctgacgttgcatttttcgcggagaaattta
ttgctaggtgttggtatgtttgattcgacataa
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