Ooceraea biroi (clonal raider ant): 105282061
Help
Entry
105282061 CDS
T05778
Name
(RefSeq) splicing factor 1 isoform X1
KO
K13095
splicing factor 1
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105282061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obo03041
]
105282061
Spliceosome [BR:
obo03041
]
Complex A
Other components
Complex A specific factors
105282061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
zf-CCHC_5
AP3D1
Motif
Other DBs
NCBI-GeneID:
105282061
NCBI-ProteinID:
XP_011342066
LinkDB
All DBs
Position
7:5912902..5919808
Genome browser
AA seq
626 aa
AA seq
DB search
MNQSRNFTSLLNPSYLQNAQQQQQNAASANSSAAMAAAAAAAAAAVNAALANGAQPNSNA
NSPNATAVVRKREMENDSMKQEKELKDGERKKRKKTRWSGSEHDKTFIPGMPTVLPTNLT
PEQERAYLFQLQIEEISRKLRTGDLGIPLNPEERSPSPEPIYSSDGKRLNTREYRTRRKL
EEERHNLIQKILKINPEFKPPPDYKPPIIRVHDKVMIPQEEHPDINFVGLLIGPRGNTLK
SMEKETGAKIIIRGKGSVKEGKVGRKDGQPLPGEDEPLHAYITANNLDAVKKAVERIHEI
IRQGVEVPEGQNDLRRNQLRELALLNGTLRENDGPRCTNCGASDHKSWLCPDKPNVTNNI
VCSSCGGAGHIARDCRSKRPGQGGPAAAGMGGMGQAGDKAKIDEEYMSLMAELGEGPPPD
RSKTGQGRQNPNPNYPGLFDRQQPPRALMAAPAHPPPQMMQGGPMMPPPGMAPPPWSQGG
EGMNNMNMQWQPPVSMPPPPGVMQPPPPPPGSTTQPNIPPLMPWMAAGNNQPPPPGQMPP
TQIPPPGMGIPPWQQNQQGPMRPPPPGTAPPPGFPGGWQPQQMGGWPPAAPVPPPPQQQT
PAPPGIDLNTLPTLLAQPPPPPPPTS
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaatcgcggaatttcacgtccctgttgaatccgagctatctgcagaacgcccag
cagcagcagcaaaatgccgcaagcgcaaactcgtcggcggctatggccgcggccgcggct
gcagcggccgctgctgtaaacgctgcgctcgccaacggcgcgcagccaaactcaaacgca
aattcgccgaacgccacggcggtggtccgcaaacgagagatggaaaatgatagcatgaaa
caagagaaagaactaaaagacggagaacgtaagaagaggaaaaagactagatggagtggt
agcgaacatgacaaaacatttataccagggatgcctacggtactaccaacaaatctgact
cctgaacaggagagggcttatctctttcagctgcaaatcgaggaaatcagcaggaagcta
cgcaccggagatcttggaattccacttaatcccgaggaaagatctccttctccagagcct
atttacagtagcgatggtaaacgattgaacacaagagaatatcgtacaagacgtaagttg
gaagaagaacgtcataatctgattcagaagatcctcaaaatcaatccggaatttaaacct
ccaccagattataaaccaccaataatacgagttcatgacaaagtaatgattccccaagaa
gaacatcctgacataaattttgttggtttgcttattgggccacgtggaaatactctaaaa
tctatggaaaaagaaacgggtgcaaagatcataattcgtggaaagggctctgtgaaggaa
ggaaaggttggcagaaaagatggacaaccattgccaggcgaggatgaaccgttgcatgct
tatattacggcaaacaatttagatgccgtgaaaaaggctgtagaacggatacacgaaatt
attcgccaaggcgtggaagtaccagagggtcaaaatgatttacgacgtaaccaattacgt
gaattggctttattgaacggaactctgcgtgaaaacgacgggccacgttgcactaattgt
ggagcttcagatcataagtcgtggctgtgtccggataagcccaatgtgaccaataacata
gtgtgctcgagttgtggtggtgcaggacacattgctcgagattgtaggtcaaaaagaccc
ggccaaggaggtccggcagctgccggaatgggaggaatgggccaagctggtgataaagcc
aagatagatgaagaatacatgtccctaatggcagaattgggagaaggtccaccaccagat
agatcgaagacgggacagggcagacaaaatcctaatcccaattatcctggactttttgat
agacaacaaccaccacgtgcattgatggcagccccggcacatccgccaccacagatgatg
caaggtggtccaatgatgccaccgccgggtatggcgccgccaccatggagtcagggcggc
gaaggaatgaacaacatgaatatgcagtggcagccaccagtgagcatgccgcctccaccg
ggcgtgatgcagccaccaccgccgccacctggctccactactcagccaaacattccgccg
ttaatgccgtggatggccgctggaaacaatcaaccaccgcctccaggtcagatgccaccc
actcagattccgccaccaggaatgggtatacctccgtggcagcaaaatcagcagggtccg
atgcgaccgccaccaccaggcactgcaccgccgccaggttttcctggtggttggcaaccg
caacagatgggaggctggccgccggcggctccggtgccgcctccgccacagcaacaaact
cctgcaccacctgggattgacttgaacacattgccgacattgctggcgcagccaccaccg
ccaccaccgcccaccagttag
DBGET
integrated database retrieval system