Ooceraea biroi (clonal raider ant): 105282146
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Entry
105282146 CDS
T05778
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105282146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obo03019
]
105282146
Messenger RNA biogenesis [BR:
obo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105282146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D2
HBS1_N
GTP_EFTU_D3
MMR_HSR1
AAA_22
Dynamin_N
Ras
Motif
Other DBs
NCBI-GeneID:
105282146
NCBI-ProteinID:
XP_011342211
LinkDB
All DBs
Position
10:12605787..12611074
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AA seq
700 aa
AA seq
DB search
MSRHRDVRCMNYSDEYDGYDDVYGHSVEDDYCVSPSAEQFLFDRSKQQNIASFITEPDIL
EDNEDVDEPSASLSEDKCNLSELEKAKLLSCMDTIRNVIGDTVPESKLKEKIISSGFNAD
VALDAILKESSPKNAINSAANKERGLERHPGNKLSSKPALQVATPIKVVSTGTKPVVKGF
DLSGVENAELLSPRCQSPSSNRNSPEVKRKENIVQKERKAISSKTNSPRCQSPISGHVTP
DLDSKAKSNASNEEKMDAQAIYKSKRGDSKEQLHLVVVGHVDAGKSTLLGRLLCDLGQVP
QRLIHKYQQESKKIGKQSFAYAWVLDETGEERERGITMDIGHSKFETDTKSITLLDAPGH
KDFIPNMITGATQADVALLVVDATRGEFETGFDSGGQTREHALLLRSLGVSQLAVVVNKL
DTVDWSKDRFNEIVDKMSVFLKQAGFKDTVTFVPCSGLSGENIVTKPKEQLSNWYTGPTL
VSVIDNFKCPERPVNKPFRFSVNDIFKGTGSGFCVSGHVETGMVSLGDKVLILPQNEIAV
VKGLQTDEVSMTSVFAGDHVALTLAGIEQQNVSIGDIICNPQSPAPVTTCFQAHVVVFAI
AKPITKGLPVVMHQQSLVQPAVITKLVAQLHRSTGDVMKKKPRCLPKNSSAIIEVVTQNP
VCMELYKDIKQLGRVMLRLEDTLYSEKDYSFFFPRSIYIL
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtcacggcatcgagacgttcgctgcatgaattattcggacgaatacgatggctacgat
gacgtttacggacattcagtggaggatgattactgcgtgtcacctagcgcggagcaattc
ctgtttgatcggagcaagcaacagaatatcgcttcgttcatcaccgagccagacatattg
gaggacaacgaggatgttgatgagccttcagcatcgctcagtgaagataaatgtaatctt
tctgaattggaaaaagcaaagctgttatcttgcatggacacaatcagaaatgtcataggt
gataccgtgcccgagtccaagctgaaggagaagattatttcgtcaggcttcaatgcggac
gtggcgctcgatgccattctaaaggaatcttcaccaaaaaatgctattaattcagcagcg
aataaggaacgaggattggagcggcatccaggtaacaaattatcgtccaagcctgcattg
caagtcgctacacccatcaaagtcgtgtccactggaacgaagcccgtggtaaagggtttc
gacttgagcggtgtcgagaacgcggaattactgagtccgcgttgccagagcccgtcctcc
aatcggaacagtcccgaggtcaagcgcaaggagaacatcgtgcagaaggagagaaaagca
atctcctcgaagacaaacagcccgaggtgccagtcacccatatcgggccacgtgacgccg
gacctggactcgaaagctaaatccaacgcgtccaacgaggagaagatggacgcccaggct
atatacaagagtaaacggggcgacagcaaggaacagctgcacttggttgtggtgggacac
gtcgacgccgggaagagcacgttgctcggacgactgctctgcgacctgggccaggtgccg
cagagactgattcacaagtaccagcaggagagcaagaaaataggaaagcagtcgttcgcg
tacgcctgggtgctcgacgagaccggtgaagagagagagcgaggcatcacgatggacata
ggccactccaagttcgaaacggacaccaagtccatcaccctcctcgacgcacctggccac
aaggacttcatcccgaacatgataaccggcgccacgcaggcggacgtggctctgctggtg
gtggacgcgaccaggggcgaattcgagactggattcgacagcggtgggcagacgcgcgag
cacgcgttgctgctgcgttccttaggagtatcgcaactggcagtggtcgtaaacaagctg
gacaccgtggactggtccaaggacagattcaacgagatagttgacaagatgagcgtgttc
ctgaaacaagccggcttcaaggataccgtcacctttgtaccttgcagcggtctgtccggc
gagaacatcgtgacgaagccgaaggagcaactgtctaactggtatactggaccgactcta
gtcagcgtgatcgataacttcaagtgtccggagcgacctgtaaacaagccattccgtttc
tcggtcaacgatatattcaagggcaccgggtccggcttctgcgtgtcgggccacgttgaa
acgggtatggtgtccctgggcgacaaagttctgatattgccgcaaaacgagatcgcagtt
gtcaagggtctccagacggacgaggtctcgatgacgagcgtgttcgccggcgatcacgtc
gcgctgacactagcgggaatcgagcaacagaacgtgagcatcggcgacataatctgcaac
ccgcagagcccggcgccggtgacgacgtgctttcaagcgcacgtggtcgtgttcgcgatc
gcgaaaccgatcacgaaggggcttccagtggtgatgcaccaacagtccctggtacagccg
gcggtaattacgaaattggtggcgcagctacatcgcagcaccggcgacgtgatgaagaag
aagccgcgctgtttaccgaagaattccagcgcgatcatcgaggtcgtgacgcaaaatcca
gtctgcatggagctgtacaaggatattaagcagttgggcagagttatgttgcgattagaa
gacaccctgtatagtgaaaaagattactcattttttttcccccggtcgatttacattctg
taa
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